View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14474_low_1 (Length: 784)

Name: NF14474_low_1
Description: NF14474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14474_low_1
NF14474_low_1
[»] chr8 (8 HSPs)
chr8 (1-770)||(3684792-3685560)
chr8 (40-162)||(3677460-3677582)
chr8 (40-132)||(3661939-3662031)
chr8 (44-132)||(3668029-3668117)
chr8 (453-507)||(44907218-44907273)
chr8 (194-257)||(3661814-3661877)
chr8 (194-261)||(3667900-3667967)
chr8 (451-488)||(1773873-1773910)
[»] chr1 (4 HSPs)
chr1 (451-507)||(31042999-31043055)
chr1 (448-507)||(34861264-34861323)
chr1 (451-507)||(48947202-48947258)
chr1 (442-488)||(10355098-10355144)
[»] chr4 (3 HSPs)
chr4 (448-507)||(22889255-22889314)
chr4 (448-507)||(22940919-22940978)
chr4 (448-507)||(31262911-31262969)
[»] chr3 (1 HSPs)
chr3 (440-507)||(50644121-50644188)
[»] chr2 (4 HSPs)
chr2 (448-507)||(30822772-30822831)
chr2 (446-488)||(39647844-39647886)
chr2 (417-506)||(21277517-21277606)
chr2 (447-488)||(40874809-40874850)
[»] chr5 (1 HSPs)
chr5 (446-488)||(31914163-31914205)


Alignment Details
Target: chr8 (Bit Score: 638; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 1 - 770
Target Start/End: Complemental strand, 3685560 - 3684792
Alignment:
Q  1 cattaatatgaaactataaagctaagagaatatgtaatgatatttaccaaaaaggataaccacatggtgtcaaactccgtgatataggatgatttcaacc 100  Q
    |||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3685560 cattaatatgaaactataacactaagagaatatgtaatggtatttaccaaaaaggataaccacatggtgtcaaactccttgatataggatgatttcaacc 3685461  T
Q  101 tgaacctcatcaaccatataatcattaatgttaacaagaaatataacagatctatcacagtgcggtagtcgaactccatgacgacgctacaacctaatct 200  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  3685460 tgaacctcatcaaccatataatcattaatgtcaacaagaaatataacagatccatcacagtgcggtagtcaaactccatgacgacgctacaacctaatct 3685361  T
Q  201 tgttgttagaaataaagcattaagctcttgaaacttgagagataaacctaaaaatatcaaattgttcttcatgttagcacaatatgaagcaaaaagttaa 300  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3685360 tgttgctagaaataaagcattaagctcttgaaacttgagagataaacctaaaaatatcaaattgttcttcatgttagcataatatgaagcaaaaagttaa 3685261  T
Q  301 aatacatcgatctataaaaatgtttggaatttttcgaataaccatacaatttttagtatgagaaataaataagaaatattattattcatttataacaaaa 400  Q
    ||||| |  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3685260 aatacttaaatctataaaaatgtttggaatttttcgaataaccatagaatttttagtatgagaaataaataagaaatattattattcatttataacaaaa 3685161  T
Q  401 tactaactcaattgttttaaaggccttgttaacgagcaccaccgaaacactctttaagctttctaaattaagtaattactttttaaaagcgtcaaatttt 500  Q
    ||| ||||||| |||||||| |||||||||||||||||||| |||| ||  ||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  3685160 taccaactcaaatgttttaagggccttgttaacgagcaccatcgaatcaaactttaagctttttaaattaaataattactttttaaaagcgtcaaatttt 3685061  T
Q  501 tcaatttataaaaatttaccatttaaggtccttaaataatgtctcagagtcggagacactagttaacatgttccttgttttaattagaaaaacctagcaa 600  Q
    ||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||| ||| || |||||||||||||||||||||||    
T  3685060 tcaatttataaaaatttaccatttaaggttcttaaatagtgtctcggagtcggagacactagttaacattttctttattttaattagaaaaacctagcaa 3684961  T
Q  601 tactaactatatgatgaatatacacatataactcaaaagataaagaaaaattattatttaatatattcaagaaccatctccatgattttttatattcaag 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  3684960 tactaactatatgatgaatatacacatataactcaaaagataaagaaaaatta-tatttaatatatccaagaaccatctccatgattttttatattcaag 3684862  T
Q  701 gaattgaaagtagaggagaggatatttaatatacaaggaattaggaacactataggtgaccaaaaatcct 770  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  3684861 gaattgaaagtagaggagaggatatttaatacacaaggaattaggaacactaaaggtgaccaaaaatcct 3684792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 3677582 - 3677460
Alignment:
Q  40 atatttaccaaaaaggataaccacatggtgtcaaactccgtgatataggatgatttcaacctgaacctcatcaaccatataatcattaatgttaacaaga 139  Q
    ||||||||||||||||||||||||||| | ||||||||| | ||||| ||||| |||| | | || || |||||||| |||| || ||||||| ||||||    
T  3677582 atatttaccaaaaaggataaccacatgttatcaaactccttcatataagatgacttcagcttaaatcttatcaaccaaataaccagtaatgttgacaaga 3677483  T
Q  140 aatataacagatctatcacagtg 162  Q
     ||||| |||||| | |||||||    
T  3677482 gatatatcagatccaacacagtg 3677460  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 3662031 - 3661939
Alignment:
Q  40 atatttaccaaaaaggataaccacatggtgtcaaactccgtgatataggatgatttcaacctgaacctcatcaaccatataatcattaatgtt 132  Q
    ||||||||||| || |||||||||||| ||||||||||| |||||||||||||||||| | |||| || |||| ||| |||| || |||||||    
T  3662031 atatttaccaacaatgataaccacatgttgtcaaactccttgatataggatgatttcagcttgaatcttatcatccaaataaccagtaatgtt 3661939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 3668117 - 3668029
Alignment:
Q  44 ttaccaaaaaggataaccacatggtgtcaaactccgtgatataggatgatttcaacctgaacctcatcaaccatataatcattaatgtt 132  Q
    |||||||||| ||||||| |||| ||||||||||| |||||||||| || |||| |||||| || |||||||| |||| || |||||||    
T  3668117 ttaccaaaaaagataacctcatgttgtcaaactccttgatataggaagacttcagcctgaatctaatcaaccaaataaccaataatgtt 3668029  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 453 - 507
Target Start/End: Original strand, 44907218 - 44907273
Alignment:
Q  453 tttaagctttctaaattaagtaattactttttaaaagcgtcaaa-tttttcaattt 507  Q
    |||||||||||||||||||||||||| |||||||||  |||||| |||||||||||    
T  44907218 tttaagctttctaaattaagtaattattttttaaaaatgtcaaactttttcaattt 44907273  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 257
Target Start/End: Complemental strand, 3661877 - 3661814
Alignment:
Q  194 ctaatcttgttgttagaaataaagcattaagctcttgaaacttgagagataaacctaaaaatat 257  Q
    |||||||||||| ||||||||||||  ||||||||||   |||||| |||| ||||||||||||    
T  3661877 ctaatcttgttgctagaaataaagctgtaagctcttggctcttgagggatatacctaaaaatat 3661814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 261
Target Start/End: Complemental strand, 3667967 - 3667900
Alignment:
Q  194 ctaatcttgttgttagaaataaagcattaagctcttgaaacttgagagataaacctaaaaatatcaaa 261  Q
    |||||||||||| ||||||||||||  | ||||||||   |||||| |||||||||| ||||||||||    
T  3667967 ctaatcttgttgctagaaataaagctgtgagctcttgggtcttgagggataaacctataaatatcaaa 3667900  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 451 - 488
Target Start/End: Complemental strand, 1773910 - 1773873
Alignment:
Q  451 tctttaagctttctaaattaagtaattactttttaaaa 488  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  1773910 tctttaagctttctaaattaagttattattttttaaaa 1773873  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 451 - 507
Target Start/End: Original strand, 31042999 - 31043055
Alignment:
Q  451 tctttaagctttctaaattaagtaattactttttaaaagcgtcaaatttttcaattt 507  Q
    ||||||||| |||||||||||||||||| |||||||||  |||||| ||||||||||    
T  31042999 tctttaagcattctaaattaagtaattattttttaaaaatgtcaaagttttcaattt 31043055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 448 - 507
Target Start/End: Complemental strand, 34861323 - 34861264
Alignment:
Q  448 cactctttaagctttctaaattaagtaattactttttaaaagcgtcaaatttttcaattt 507  Q
    |||||||||||| |||||||||||||||||| |||||||||  ||||||  |||||||||    
T  34861323 cactctttaagcattctaaattaagtaattattttttaaaaatgtcaaacatttcaattt 34861264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 451 - 507
Target Start/End: Original strand, 48947202 - 48947258
Alignment:
Q  451 tctttaagctttctaaattaagtaattactttttaaaagcgtcaaatttttcaattt 507  Q
    ||||||||| | |||||||||||||||| |||||||||  |||||| ||||||||||    
T  48947202 tctttaagcatactaaattaagtaattattttttaaaaatgtcaaagttttcaattt 48947258  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 442 - 488
Target Start/End: Complemental strand, 10355144 - 10355098
Alignment:
Q  442 ccgaaacactctttaagctttctaaattaagtaattactttttaaaa 488  Q
    |||||||||||||||||  |||||||| ||||||||| |||||||||    
T  10355144 ccgaaacactctttaagtattctaaataaagtaattattttttaaaa 10355098  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 448 - 507
Target Start/End: Original strand, 22889255 - 22889314
Alignment:
Q  448 cactctttaagctttctaaattaagtaattactttttaaaagcgtcaaatttttcaattt 507  Q
    |||||||||| |||||||||||||||||||  |||||||||  || ||||||||||||||    
T  22889255 cactctttaaactttctaaattaagtaattgttttttaaaaatgttaaatttttcaattt 22889314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 448 - 507
Target Start/End: Original strand, 22940919 - 22940978
Alignment:
Q  448 cactctttaagctttctaaattaagtaattactttttaaaagcgtcaaatttttcaattt 507  Q
    |||||||||| |||||||||||||||||||  |||||||||  || ||||||||||||||    
T  22940919 cactctttaaactttctaaattaagtaattgttttttaaaaatgttaaatttttcaattt 22940978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 448 - 507
Target Start/End: Original strand, 31262911 - 31262969
Alignment:
Q  448 cactctttaagctttctaaattaagtaattactttttaaaagcgtcaaatttttcaattt 507  Q
    |||||||||||| |||||||||||||||||| |||||||||  |||||| ||||| ||||    
T  31262911 cactctttaagcattctaaattaagtaatta-tttttaaaaatgtcaaagttttcgattt 31262969  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 440 - 507
Target Start/End: Original strand, 50644121 - 50644188
Alignment:
Q  440 caccgaaacactctttaagctttctaaattaagtaattactttttaaaagcgtcaaatttttcaattt 507  Q
    |||||||||||||||||||  |  ||||||||||| ||| |||||||||  ||||||||||| |||||    
T  50644121 caccgaaacactctttaagtatattaaattaagtagttattttttaaaaatgtcaaattttttaattt 50644188  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 448 - 507
Target Start/End: Complemental strand, 30822831 - 30822772
Alignment:
Q  448 cactctttaagctttctaaattaagtaattactttttaaaagcgtcaaatttttcaattt 507  Q
    ||||||| ||||||| ||||||||||||||| ||||| |||  |||||| ||||||||||    
T  30822831 cactcttaaagctttttaaattaagtaattattttttgaaaatgtcaaagttttcaattt 30822772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 446 - 488
Target Start/End: Complemental strand, 39647886 - 39647844
Alignment:
Q  446 aacactctttaagctttctaaattaagtaattactttttaaaa 488  Q
    |||||||||||| | |||||||||||||||||| |||||||||    
T  39647886 aacactctttaaacattctaaattaagtaattattttttaaaa 39647844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 417 - 506
Target Start/End: Original strand, 21277517 - 21277606
Alignment:
Q  417 ttaaaggccttgttaacgagcaccaccgaaacactctttaagctttctaaattaagtaattactttttaaaagcgtcaaatttttcaatt 506  Q
    ||||||| ||||||||||||  |  ||| | |||||||||||  || ||||||||||||||| ||||| |||  |||||| |||||||||    
T  21277517 ttaaaggtcttgttaacgagtgcttccgcatcactctttaagtattttaaattaagtaattatttttttaaaatgtcaaacttttcaatt 21277606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 447 - 488
Target Start/End: Original strand, 40874809 - 40874850
Alignment:
Q  447 acactctttaagctttctaaattaagtaattactttttaaaa 488  Q
    ||||||||||| |||| ||||||||||||||| |||||||||    
T  40874809 acactctttaaactttttaaattaagtaattattttttaaaa 40874850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 446 - 488
Target Start/End: Original strand, 31914163 - 31914205
Alignment:
Q  446 aacactctttaagctttctaaattaagtaattactttttaaaa 488  Q
    |||||||||||||| |||||||||||||||||| | |||||||    
T  31914163 aacactctttaagcattctaaattaagtaattattctttaaaa 31914205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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