View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14474_low_12 (Length: 434)
Name: NF14474_low_12
Description: NF14474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14474_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 47017373 - 47016956
Alignment:
| Q |
1 |
atttgattttaagttatgaaaaaagggccccacatacattataatcaaccataaaaattatcaggaaaagtcaactaactgcattagttcaacattaaat |
100 |
Q |
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| T |
47017373 |
atttgattttaagttatgaaaaaagggccccacatacattataatcaaccataaaaattataaggaatagtcaactaactgcattagttcaacattaaat |
47017274 |
T |
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| Q |
101 |
taattgcatacttgcctgactcatgcgagggcgtaagataggagagatctcaacacatagagacgcggtcaaaacaacacgatccatttgttcttggtca |
200 |
Q |
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| T |
47017273 |
taattgcatacttgcctgactcatgcgagggcgtaagataggagagatctcaacacatagagacgcggtcaaaacaacacgatccatttgttcttggtca |
47017174 |
T |
|
| Q |
201 |
taatcatctccaagagaaggatcaacaaggtccttgatgttattagcatcaagcaaaggttttgcctaccatacaggaaatcacaatgtgttgagtgata |
300 |
Q |
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| T |
47017173 |
taatcatctccaagagaaggatcaacaagatccttgatgttattagcatcaagcaaaggttttgcctaccatataggaaatcacaatgtgttgagtgata |
47017074 |
T |
|
| Q |
301 |
tatacttgcacattgatgaaaaatataacattctactatctaggaaaatgataaacttaattaccgataacacgacactttggtgcaaatgatccaatgc |
400 |
Q |
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| T |
47017073 |
tatacttgcacattgatgaaaaatataacattctactatctaggaaaatgataaacttaattaccgataacacgagactttggtgcaaatgatccaatgc |
47016974 |
T |
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| Q |
401 |
cctacgaccagttataat |
418 |
Q |
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| T |
47016973 |
cctacggccagttataat |
47016956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 115 - 275
Target Start/End: Original strand, 36599907 - 36600067
Alignment:
| Q |
115 |
cctgactcatgcgagggcgtaagataggagagatctcaacacatagagacgcggtcaaaacaacacgatccatttgttcttggtcataatcatctccaag |
214 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||| || || |||||| ||||| |||| ||| |||||||||| | | ||||||| |
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| T |
36599907 |
cctgactcatgcgagggcgtaaaataggagactgctcaacacatattgatgcagtcaaactaacacatcccatctgtccttggtcatagttacctccaag |
36600006 |
T |
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| Q |
215 |
agaaggatcaacaaggtccttgatgttattagcatcaagcaaaggttttgcctaccataca |
275 |
Q |
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| T |
36600007 |
agaaggatcaacaacgtccttgatattattagcatcaagcaaaggttttgcctaccataca |
36600067 |
T |
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