View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14474_low_16 (Length: 384)

Name: NF14474_low_16
Description: NF14474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14474_low_16
NF14474_low_16
[»] chr5 (16 HSPs)
chr5 (14-384)||(36392285-36392638)
chr5 (275-384)||(26414891-26415002)
chr5 (275-384)||(13634709-13634820)
chr5 (277-384)||(16938479-16938588)
chr5 (282-384)||(14681475-14681578)
chr5 (272-312)||(11436934-11436974)
chr5 (274-381)||(20147014-20147117)
chr5 (267-344)||(16938655-16938733)
chr5 (282-369)||(1657964-1658052)
chr5 (272-384)||(10476021-10476137)
chr5 (277-344)||(14245222-14245290)
chr5 (282-384)||(11756883-11756986)
chr5 (275-344)||(14245086-14245156)
chr5 (275-313)||(15986832-15986870)
chr5 (275-312)||(40305874-40305911)
chr5 (282-384)||(2550487-2550591)
[»] chr7 (15 HSPs)
chr7 (273-383)||(39856001-39856113)
chr7 (274-384)||(13771081-13771193)
chr7 (275-384)||(1051633-1051744)
chr7 (282-384)||(33655243-33655347)
chr7 (277-384)||(25887192-25887301)
chr7 (332-384)||(40196667-40196720)
chr7 (277-384)||(47390855-47390964)
chr7 (274-347)||(13425117-13425191)
chr7 (277-384)||(34228453-34228563)
chr7 (319-384)||(41497092-41497158)
chr7 (274-312)||(48881758-48881796)
chr7 (283-347)||(4833537-4833602)
chr7 (275-312)||(37925839-37925876)
chr7 (282-365)||(31571625-31571709)
chr7 (282-380)||(43230241-43230341)
[»] chr4 (18 HSPs)
chr4 (277-384)||(26166937-26167046)
chr4 (274-384)||(54935064-54935177)
chr4 (274-384)||(1968494-1968606)
chr4 (282-380)||(46007840-46007940)
chr4 (273-384)||(54320431-54320543)
chr4 (275-384)||(31348456-31348567)
chr4 (273-384)||(37711134-37711252)
chr4 (277-384)||(47433843-47433953)
chr4 (282-384)||(27735750-27735854)
chr4 (273-364)||(2247958-2248049)
chr4 (277-344)||(37711299-37711367)
chr4 (277-344)||(54935245-54935313)
chr4 (275-381)||(56135747-56135855)
chr4 (274-384)||(21695024-21695135)
chr4 (275-344)||(49735466-49735536)
chr4 (328-384)||(35248738-35248795)
chr4 (321-384)||(6891405-6891469)
chr4 (337-384)||(36151637-36151685)
[»] chr6 (18 HSPs)
chr6 (274-381)||(16738134-16738242)
chr6 (277-384)||(12811115-12811224)
chr6 (282-384)||(2893635-2893739)
chr6 (282-384)||(9719166-9719269)
chr6 (282-383)||(21606980-21607083)
chr6 (275-383)||(14515471-14515579)
chr6 (272-363)||(10818224-10818316)
chr6 (282-384)||(19278173-19278276)
chr6 (282-384)||(33041475-33041579)
chr6 (274-344)||(9721135-9721206)
chr6 (282-384)||(30487440-30487544)
chr6 (282-384)||(31849115-31849219)
chr6 (282-344)||(9719036-9719099)
chr6 (334-384)||(13583777-13583828)
chr6 (275-313)||(4097233-4097271)
chr6 (271-312)||(15323219-15323260)
chr6 (271-312)||(15353358-15353399)
chr6 (272-312)||(23090990-23091030)
[»] chr3 (10 HSPs)
chr3 (274-384)||(25655107-25655219)
chr3 (275-384)||(24560215-24560326)
chr3 (271-384)||(41110456-41110571)
chr3 (275-384)||(651738-651840)
chr3 (282-384)||(14897981-14898085)
chr3 (273-384)||(6803336-6803449)
chr3 (328-384)||(46556195-46556252)
chr3 (274-306)||(9312684-9312716)
chr3 (333-384)||(10748432-10748484)
chr3 (277-364)||(28582665-28582753)
[»] chr1 (11 HSPs)
chr1 (272-384)||(12234005-12234119)
chr1 (275-384)||(40095068-40095180)
chr1 (277-382)||(30010332-30010439)
chr1 (274-343)||(41498401-41498471)
chr1 (277-384)||(32951453-32951562)
chr1 (282-384)||(38510029-38510133)
chr1 (284-384)||(2859067-2859169)
chr1 (277-364)||(35349618-35349706)
chr1 (285-384)||(10391880-10391981)
chr1 (276-312)||(26324013-26324049)
chr1 (277-344)||(40094933-40095001)
[»] chr2 (9 HSPs)
chr2 (277-384)||(36347676-36347785)
chr2 (273-384)||(19566956-19567064)
chr2 (279-380)||(8427010-8427113)
chr2 (277-383)||(35736175-35736283)
chr2 (275-384)||(15224829-15224940)
chr2 (322-384)||(29525868-29525931)
chr2 (274-311)||(17380051-17380088)
chr2 (272-344)||(22356180-22356253)
chr2 (328-384)||(18811381-18811437)
[»] scaffold0067 (1 HSPs)
scaffold0067 (274-384)||(39325-39437)
[»] chr8 (14 HSPs)
chr8 (275-384)||(6315064-6315171)
chr8 (282-384)||(11575541-11575645)
chr8 (277-384)||(7503089-7503198)
chr8 (277-384)||(31543207-31543316)
chr8 (328-384)||(42650471-42650528)
chr8 (321-384)||(37032424-37032488)
chr8 (282-384)||(30479852-30479956)
chr8 (275-312)||(43732677-43732714)
chr8 (282-380)||(7979145-7979245)
chr8 (274-306)||(8815356-8815388)
chr8 (277-384)||(11033419-11033526)
chr8 (277-344)||(31738599-31738667)
chr8 (333-380)||(37923217-37923265)
chr8 (277-344)||(43732863-43732931)
[»] scaffold0096 (1 HSPs)
scaffold0096 (277-384)||(6584-6693)
[»] scaffold0026 (1 HSPs)
scaffold0026 (282-361)||(1177-1257)


Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 384
Target Start/End: Complemental strand, 36392638 - 36392285
Alignment:
Q  14 gtgagattcatggggggagtatgagattcattggatatgtgatttgatgacctagaactaataaggtcagattaaggtacaacgtggtaaaaatggtggg 113  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36392638 gtgagattcatggagggagtgtgagattcattggatatgtgatttgatgacctagaaccaataaggtcagattaaggtacaacgtggtaaaaatggtggg 36392539  T
Q  114 tttgacctagaaccattggatatgtgatttcatggagggagatatttgtttctttattttatgataagagagataataaattagaaaataaaggagatgg 213  Q
    || |||     ||            |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  36392538 tt-gacg----ac------------gatttcatggagggagatatttgtttctttattttatgataagagagaaaataaattagaaaataaagaagatgg 36392456  T
Q  214 aaaaggaaatttaacatgagagaaaggacaagtaaaaaataagaagtgtgcgctttgattttaagggcgtgtttggattgagggtttaggaggcgaag-g 312  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||| |    
T  36392455 aaaagaaaatttaacatgagagaaaggacaagtaaaaaataagaagtg-gcgctttgatcttaagggcgtgtttggattgagggtttaggaggggaagag 36392357  T
Q  313 agcggtgggtttatatttcgtttttaaattacagaatatataatatgttttttaaaatagattaagtgtgat 384  Q
    ||||||| |||||||||||||||||||||||| || |||||||||| |||| ||||||||||||||||||||    
T  36392356 agcggtgtgtttatatttcgtttttaaattacggactatataatatattttctaaaatagattaagtgtgat 36392285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 275 - 384
Target Start/End: Original strand, 26414891 - 26415002
Alignment:
Q  275 taagggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatag 372  Q
    |||||| ||||||||||||||||||||||||| ||| |||| || |||||||  ||||||||||||||||| || ||||| | |||||||| |||||||     
T  26414891 taagggtgtgtttggattgagggtttaggaggagaagggaggggagggtttacttttcgtttttaaattacggactatatgacatgtttttctaaaatat 26414990  T
Q  373 attaagtgtgat 384  Q
    ||||||||||||    
T  26414991 attaagtgtgat 26415002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 275 - 384
Target Start/End: Original strand, 13634709 - 13634820
Alignment:
Q  275 taagggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatag 372  Q
    |||||| ||||||||||||||||||||||||| ||| |||| || |||||||  |||| ||||||||| || || ||||||| |||||||| |||||||     
T  13634709 taagggtgtgtttggattgagggtttaggaggggaagggaggggagggtttacttttcttttttaaataacggactatataacatgtttttctaaaataa 13634808  T
Q  373 attaagtgtgat 384  Q
    |||| |||||||    
T  13634809 attatgtgtgat 13634820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 16938479 - 16938588
Alignment:
Q  277 agggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttt-tttaaaatagat 374  Q
    |||| ||||||||||||||||||||||||| ||| |||| || |||||| | |||| ||||||| |||| || ||||||| |||||| | ||||||| ||    
T  16938479 agggtgtgtttggattgagggtttaggaggggaagggaggggagggtttgtttttcttttttaagttacggactatataacatgtttctctaaaataaat 16938578  T
Q  375 taagtgtgat 384  Q
    ||||||||||    
T  16938579 taagtgtgat 16938588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 384
Target Start/End: Original strand, 14681475 - 14681578
Alignment:
Q  282 gtgtttggattgagggtttaggaggcgaaggagcggtgggtttatatttcgtttttaaattacagaatatataatatg-ttttttaaaatagattaagtg 380  Q
    ||||||||||||||||||||||||| ||||||   |  |||| |  |||| ||||||||||||||| ||||||| ||| |||||||||||| ||||| ||    
T  14681475 gtgtttggattgagggtttaggaggggaaggaagtgatggttaaattttcttttttaaattacagattatataacatgtttttttaaaataaattaaatg 14681574  T
Q  381 tgat 384  Q
    ||||    
T  14681575 tgat 14681578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 11436934 - 11436974
Alignment:
Q  272 ttttaagggcgtgtttggattgagggtttaggaggcgaagg 312  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  11436934 ttttaagggcgtgtttggattgagggtttaggaggggaagg 11436974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 381
Target Start/End: Complemental strand, 20147117 - 20147014
Alignment:
Q  274 ttaagggcgtgtttggattgagggtttaggaggcgaaggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatag 372  Q
    ||||||| ||||||||||||||||||||||||| ||||    || |||||||  |||| |||||||||||| || ||||| | |||||||| |||||||     
T  20147117 ttaagggtgtgtttggattgagggtttaggaggggaag----ggagggtttacttttcatttttaaattacggattatat-acatgtttttctaaaataa 20147023  T
Q  373 attaagtgt 381  Q
    |||||||||    
T  20147022 attaagtgt 20147014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 344
Target Start/End: Complemental strand, 16938733 - 16938655
Alignment:
Q  267 tttgattttaagggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattac 344  Q
    |||| ||||||||| |||||||||| |||||||||||||  ||| |||| || ||||||| ||||| ||||||||||||    
T  16938733 tttgtttttaagggtgtgtttggatggagggtttaggagaggaatggaggggagggtttagatttcatttttaaattac 16938655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 369
Target Start/End: Complemental strand, 1658052 - 1657964
Alignment:
Q  282 gtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttttaaaa 369  Q
    |||||||||| |||||||||||||| ||| |||| || |||||||  |||| |||||||||||| ||   ||||| |||||||||||||    
T  1658052 gtgtttggatggagggtttaggaggggaagggaggggagggtttacttttcatttttaaattacggacactataaaatgttttttaaaa 1657964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 384
Target Start/End: Original strand, 10476021 - 10476137
Alignment:
Q  272 ttttaagggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgttttt-aaattacagaatatata-atatgttttt-taa 367  Q
    ||||||||| ||||||| ||||||||||||||||| ||| |||   | |||||||  |||| ||||| |||||||||| |||||| | |||||||| |||    
T  10476021 ttttaagggtgtgtttgaattgagggtttaggaggggaagggatgagagggtttacttttcttttttaaaattacagattatatatacatgtttttctaa 10476120  T
Q  368 aatagattaagtgtgat 384  Q
    |||| ||||||||||||    
T  10476121 aataaattaagtgtgat 10476137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 344
Target Start/End: Complemental strand, 14245290 - 14245222
Alignment:
Q  277 agggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattac 344  Q
    |||| ||||||||||||||||||||||||| ||| |||| || |||||| | |||| ||||||||||||    
T  14245290 agggtgtgtttggattgagggtttaggaggggaagggaggggagggtttgtttttcatttttaaattac 14245222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 384
Target Start/End: Original strand, 11756883 - 11756986
Alignment:
Q  282 gtgtttggattgagggtttaggaggcgaaggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttt-tttaaaatagattaagtg 380  Q
    ||||||||||||||||||||||||| || |||  || | |||| | |||  ||||||||||||  | ||||||| |||||| | ||||||| ||||||||    
T  11756883 gtgtttggattgagggtttaggaggggagggatgggagagtttgtttttattttttaaattacgaactatataacatgtttctctaaaataaattaagtg 11756982  T
Q  381 tgat 384  Q
    ||||    
T  11756983 tgat 11756986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 344
Target Start/End: Original strand, 14245086 - 14245156
Alignment:
Q  275 taagggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattac 344  Q
    |||||| ||||||||||||||||||||||||| ||| |||| || || ||||  |||| ||||||||||||    
T  14245086 taagggtgtgtttggattgagggtttaggaggggaagggaggggaggatttacttttcttttttaaattac 14245156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Complemental strand, 15986870 - 15986832
Alignment:
Q  275 taagggcgtgtttggattgagggtttaggaggcgaagga 313  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  15986870 taagggtgtgtttggattgagggtttaggaggggaagga 15986832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 40305911 - 40305874
Alignment:
Q  275 taagggcgtgtttggattgagggtttaggaggcgaagg 312  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  40305911 taagggtgtgtttggattgagggtttaggaggagaagg 40305874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 384
Target Start/End: Complemental strand, 2550591 - 2550487
Alignment:
Q  282 gtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagattaagt 379  Q
    ||||||||||||||||||||||||| ||| |||| || |||||||  |||| |||||||  | | || ||||||| |||||||| || |||| |||| ||    
T  2550591 gtgtttggattgagggtttaggaggggaagggaggggagggtttacttttcttttttaagattcggactatataacatgtttttctataataaattacgt 2550492  T
Q  380 gtgat 384  Q
    |||||    
T  2550491 gtgat 2550487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 273 - 383
Target Start/End: Complemental strand, 39856113 - 39856001
Alignment:
Q  273 tttaagggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaat 370  Q
    |||||||| ||||||||||||||||||||||||| ||| |||| || |||||||  |||| |||||||||||| || ||||||| |||||||| ||||||    
T  39856113 tttaagggtgtgtttggattgagggtttaggaggggaagggaggggagggtttacttttcttttttaaattacggactatataacatgtttttctaaaat 39856014  T
Q  371 agattaagtgtga 383  Q
    | |||||||||||    
T  39856013 aaattaagtgtga 39856001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 274 - 384
Target Start/End: Complemental strand, 13771193 - 13771081
Alignment:
Q  274 ttaagggcgtgtttggattgagggtttaggaggcgaagg-agcggtgggtttatatttcgtttttaaattacagaatatataatatg-ttttttaaaata 371  Q
    ||||||| |||||| |||||||||||||||||| ||||| ||  | | |||||  ||||||||||||||||| || ||||||| ||| ||||||||||||    
T  13771193 ttaagggtgtgtttagattgagggtttaggaggggaagggaggtgagagtttacttttcgtttttaaattacggactatataacatgtttttttaaaata 13771094  T
Q  372 gattaagtgtgat 384  Q
     ||||||||||||    
T  13771093 aattaagtgtgat 13771081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 384
Target Start/End: Complemental strand, 1051744 - 1051633
Alignment:
Q  275 taagggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatag 372  Q
    |||||| ||||||||||||||||||||||||| ||| ||||  | || ||||| |||| ||||||||||||  | |||||||  ||||||| |||||||     
T  1051744 taagggtgtgtttggattgagggtttaggaggggaagggaggagaggatttatttttcttttttaaattacgaactatataacctgtttttctaaaataa 1051645  T
Q  373 attaagtgtgat 384  Q
    ||||||||||||    
T  1051644 attaagtgtgat 1051633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 384
Target Start/End: Complemental strand, 33655347 - 33655243
Alignment:
Q  282 gtgtttggattgagggtttaggaggcgaag-gagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagattaagt 379  Q
    ||||||||||||||||||||||||| |||| |||  | |||||||  |||| |||||||||||  |  ||||||| |||||||| ||||||| |||||||    
T  33655347 gtgtttggattgagggtttaggaggggaagagaggcgagggtttacttttcttttttaaattatgggctatataacatgtttttctaaaataaattaagt 33655248  T
Q  380 gtgat 384  Q
    |||||    
T  33655247 gtgat 33655243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 25887192 - 25887301
Alignment:
Q  277 agggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagat 374  Q
    |||| |||||||||||||||||||| |||| ||| |||| || || ||| | |||| ||| ||||| || || ||||||| |||||||| ||||||| ||    
T  25887192 agggtgtgtttggattgagggtttatgaggggaagggaggggaggatttgtttttcttttataaatcacggactatataacatgtttttctaaaataaat 25887291  T
Q  375 taagtgtgat 384  Q
    ||||||||||    
T  25887292 taagtgtgat 25887301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 332 - 384
Target Start/End: Complemental strand, 40196720 - 40196667
Alignment:
Q  332 gtttttaaattacagaatatataatatgttttt-taaaatagattaagtgtgat 384  Q
    ||||||||||||| |||||||||| |||||||| ||||||| ||||||||||||    
T  40196720 gtttttaaattacggaatatataacatgtttttctaaaataaattaagtgtgat 40196667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 47390855 - 47390964
Alignment:
Q  277 agggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagat 374  Q
    |||| |||||||||||||||| |||||||| ||| |||| || |||||||  |||| |||||||||||   | ||||||| |||||||| ||||||| ||    
T  47390855 agggtgtgtttggattgaggggttaggaggggaagggagtggagggtttacttttcttttttaaattatgaactatataacatgtttttctaaaatacat 47390954  T
Q  375 taagtgtgat 384  Q
    ||| ||||||    
T  47390955 taattgtgat 47390964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 13425117 - 13425191
Alignment:
Q  274 ttaagggcgtgtttggattgagggtttaggaggcgaagg-agcggtgggtttatatttcgtttttaaattacaga 347  Q
    ||||||| |||||||||| |||||||||||||| ||||| || ||  ||||||| |||  |||||||||||||||    
T  13425117 ttaagggtgtgtttggatagagggtttaggaggggaaggaagaggatggtttattttttatttttaaattacaga 13425191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 34228563 - 34228453
Alignment:
Q  277 agggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaa-tatataatatgttttt-taaaataga 373  Q
    |||| ||||||| ||||| ||||||||||| ||| |||| || || ||||  |||| |||| ||||||| ||| ||||||| |||||||| ||||||| |    
T  34228563 agggtgtgtttgaattgaaggtttaggaggagaagggaggggaggatttacttttcattttaaaattacggaactatataacatgtttttctaaaataaa 34228464  T
Q  374 ttaagtgtgat 384  Q
    |||||||||||    
T  34228463 ttaagtgtgat 34228453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 384
Target Start/End: Complemental strand, 41497158 - 41497092
Alignment:
Q  319 gggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagattaagtgtgat 384  Q
    |||||||  |||| |||||||||||| || ||||||| |||||||| ||||||| ||||||||||||    
T  41497158 gggtttacttttcttttttaaattacggactatataacatgtttttctaaaataaattaagtgtgat 41497092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 312
Target Start/End: Complemental strand, 48881796 - 48881758
Alignment:
Q  274 ttaagggcgtgtttggattgagggtttaggaggcgaagg 312  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  48881796 ttaagggtgtgtttggattgagggtttaggaggggaagg 48881758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 4833537 - 4833602
Alignment:
Q  283 tgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacaga 347  Q
    ||||||||| |||||||||||||| ||| |||| || |||||||  |||| |||||||||||||||    
T  4833537 tgtttggatggagggtttaggaggggaagggaggggagggtttacttttcatttttaaattacaga 4833602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 312
Target Start/End: Original strand, 37925839 - 37925876
Alignment:
Q  275 taagggcgtgtttggattgagggtttaggaggcgaagg 312  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  37925839 taagggtgtgtttggattgagggtttaggaggggaagg 37925876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 365
Target Start/End: Complemental strand, 31571709 - 31571625
Alignment:
Q  282 gtgtttggattgagggtttaggaggcgaag-gagcggtgggtttatatttcgtttttaaattacagaatatataatatgtttttt 365  Q
    ||||||||||||||||||||||||| |||| ||| || | |||||  |||| |||||||||||| ||  |||||| ||| |||||    
T  31571709 gtgtttggattgagggtttaggaggggaagcgaggggagagtttacttttcttttttaaattacggaccatataacatgcttttt 31571625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 380
Target Start/End: Original strand, 43230241 - 43230341
Alignment:
Q  282 gtgtttggattgagggtttaggaggcgaagga-gcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagattaagt 379  Q
    |||||||||||| ||||||| |||   ||||| | || |||||||  |||| |||||||||||| || ||||||| |||||||| ||||||| |||||||    
T  43230241 gtgtttggattgggggtttaagagagaaaggaaggggagggtttacttttcttttttaaattacggattatataacatgtttttctaaaataaattaagt 43230340  T
Q  380 g 380  Q
    |    
T  43230341 g 43230341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 26166937 - 26167046
Alignment:
Q  277 agggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttt-tttaaaatagat 374  Q
    |||| ||||||||||||||||||||||||| ||| |||| || | |||| | |||| ||||||||||||||| ||||||| |||||| | ||||||| ||    
T  26166937 agggtgtgtttggattgagggtttaggaggggaatggaggggagagtttgtttttcttttttaaattacagactatataacatgtttctctaaaataaat 26167036  T
Q  375 taagtgtgat 384  Q
    ||||||||||    
T  26167037 taagtgtgat 26167046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 384
Target Start/End: Original strand, 54935064 - 54935177
Alignment:
Q  274 ttaagggcgtgtttggattgagggtttaggaggcgaagg--agcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaat 370  Q
    ||||||| ||||||||||||||||||||||||| |||||   | || |||||||  |||| ||||||||||||  | ||||||| |||||||| ||||||    
T  54935064 ttaagggtgtgtttggattgagggtttaggaggggaagggagggggagggtttacttttcttttttaaattacgaactatataacatgtttttctaaaat 54935163  T
Q  371 agattaagtgtgat 384  Q
    | ||||||||||||    
T  54935164 aaattaagtgtgat 54935177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 384
Target Start/End: Complemental strand, 1968606 - 1968494
Alignment:
Q  274 ttaagggcgtgtttggattgagggtttaggaggcgaagg-agcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaata 371  Q
    ||||||| ||||||||||||||||||||||||| ||||| || |  | |||||  |||| |||||||||||| || |||||||||||||||| |||||||    
T  1968606 ttaagggtgtgtttggattgagggtttaggaggggaagggagggaagagtttaattttcatttttaaattacggactatataatatgtttttctaaaata 1968507  T
Q  372 gattaagtgtgat 384  Q
     || | |||||||    
T  1968506 aatcaggtgtgat 1968494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 380
Target Start/End: Complemental strand, 46007940 - 46007840
Alignment:
Q  282 gtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagattaagt 379  Q
    ||||||||||||||||||||||||| ||| |||| || |||||||  |||| |||||||||| |||| |||||||  ||||||| ||||||| |||||||    
T  46007940 gtgtttggattgagggtttaggaggggaagggaggggagggtttacttttcttttttaaattgcagactatataacttgtttttgtaaaataaattaagt 46007841  T
Q  380 g 380  Q
    |    
T  46007840 g 46007840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 273 - 384
Target Start/End: Original strand, 54320431 - 54320543
Alignment:
Q  273 tttaagggcgtgtttggattgagggtttaggaggcgaaggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaata 371  Q
    |||||||| |||||||||||||||||||||||||  ||||   || ||||||   |||| |||||||||||| || ||||||  |||||||| |||||||    
T  54320431 tttaagggtgtgtttggattgagggtttaggagggaaagggagggagggtttgattttcttttttaaattaccgactatatatcatgtttttctaaaata 54320530  T
Q  372 gattaagtgtgat 384  Q
     ||||||||||||    
T  54320531 aattaagtgtgat 54320543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 384
Target Start/End: Complemental strand, 31348567 - 31348456
Alignment:
Q  275 taagggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatag 372  Q
    |||||| |||||||||||||| |||||||||| ||| |||| || |||||||  |||| ||||||||| || || ||||||| |||||||| |||||||     
T  31348567 taagggtgtgtttggattgagagtttaggaggggaagggaggggagggtttacttttcttttttaaataacggactatataacatgtttttctaaaataa 31348468  T
Q  373 attaagtgtgat 384  Q
    |||| |||||||    
T  31348467 attatgtgtgat 31348456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 273 - 384
Target Start/End: Original strand, 37711134 - 37711252
Alignment:
Q  273 tttaagggcgtgtttggattgagggtttaggaggcgaa------ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttt-ttt 365  Q
    |||||||| ||||||||||||||||||||||||| |||      |||| || |||||| | |||| |||||||||||| || ||||||| |||||| | |    
T  37711134 tttaagggtgtgtttggattgagggtttaggaggggaagggaagggaggggagggtttgtttttcttttttaaattacggactatataacatgtttctct 37711233  T
Q  366 aaaatagattaagtgtgat 384  Q
    |||||| ||||||||||||    
T  37711234 aaaataaattaagtgtgat 37711252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 47433953 - 47433843
Alignment:
Q  277 agggcgtgtttggattgagggtttaggaggcgaagg-agcggtgggtttatatttcgtttttaaattacagaatata-taatatgtttttt-aaaataga 373  Q
    |||| |||||||| |||| ||||||||||| ||||| || || |||||||  |||| ||||||||||||||| |||| ||| ||||||||| |||||| |    
T  47433953 agggtgtgtttgggttgacggtttaggaggggaagggagaggagggtttacttttcttttttaaattacagactataataacatgtttttttaaaataaa 47433854  T
Q  374 ttaagtgtgat 384  Q
    |||||||||||    
T  47433853 ttaagtgtgat 47433843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 384
Target Start/End: Original strand, 27735750 - 27735854
Alignment:
Q  282 gtgtttggattgagggtttaggaggcgaaggagcg-gtgggtttatatttcgtttttaaattacagaatatataatatg-ttttttaaaatagattaagt 379  Q
    |||||||||| |||||||||||||| |||||   | | |||||||  |||| |||||||||||| || ||||||| ||| |||||||||||| |||||||    
T  27735750 gtgtttggatcgagggtttaggaggggaagggaagagagggtttaattttcatttttaaattacggactatataacatgtttttttaaaataaattaagt 27735849  T
Q  380 gtgat 384  Q
    |||||    
T  27735850 gtgat 27735854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 364
Target Start/End: Complemental strand, 2248049 - 2247958
Alignment:
Q  273 tttaagggcgtgtttggattgagggtttaggaggcgaag-gagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt 364  Q
    ||||| || ||||||||||||||||||||||||| |||| ||  || | |||||  |||| |||||||||||||| |||||||| ||||||||    
T  2248049 tttaatggtgtgtttggattgagggtttaggaggagaagtgaagggagagtttacttttcttttttaaattacag-atatataacatgttttt 2247958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 344
Target Start/End: Complemental strand, 37711367 - 37711299
Alignment:
Q  277 agggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattac 344  Q
    |||| |||||||||| |||||||||||||| ||| |||| || ||||||| ||||| ||||||||||||    
T  37711367 agggtgtgtttggatggagggtttaggaggggaagggaggggagggtttagatttcatttttaaattac 37711299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 344
Target Start/End: Complemental strand, 54935313 - 54935245
Alignment:
Q  277 agggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattac 344  Q
    |||| |||||||||| |||||||||||||| ||| |||| || |||||||| |||| ||||||||||||    
T  54935313 agggtgtgtttggatggagggtttaggaggggaagggaggggagggtttatttttcatttttaaattac 54935245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 381
Target Start/End: Original strand, 56135747 - 56135855
Alignment:
Q  275 taagggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatg-ttttttaaaatag 372  Q
    |||||| ||||||||||||||||||||||||| ||| |||| || ||||| || |||  ||||||||||||  |  || ||| ||| ||||||||||||     
T  56135747 taagggtgtgtttggattgagggtttaggaggggaagggaggggagggttcatttttattttttaaattacgaacaatgtaaaatgtttttttaaaataa 56135846  T
Q  373 attaagtgt 381  Q
    |||||||||    
T  56135847 attaagtgt 56135855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 384
Target Start/End: Complemental strand, 21695135 - 21695024
Alignment:
Q  274 ttaagggcgtgtttggattgagggtttaggaggcgaagg-agcggtgggtttatatttcgtttttaaattacagaatatataatatgttttttaaaatag 372  Q
    ||||||| |||||||||||| ||||||| |||| ||||| ||||| |||||||  ||||  ||||||||||  ||  ||||||| | ||||||  ||||     
T  21695135 ttaagggtgtgtttggattgggggtttatgaggggaaggaagcggagggtttacttttctattttaaattatggacaatataatttattttttttaataa 21695036  T
Q  373 attaagtgtgat 384  Q
    ||||||||||||    
T  21695035 attaagtgtgat 21695024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 344
Target Start/End: Original strand, 49735466 - 49735536
Alignment:
Q  275 taagggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattac 344  Q
    |||||| ||||||||||||||||||||||||| ||| |||| || ||||| |  |||| ||||||||||||    
T  49735466 taagggtgtgtttggattgagggtttaggaggggaagggaggggagggttcacttttcatttttaaattac 49735536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 35248738 - 35248795
Alignment:
Q  328 tttcgtttttaaattacagaatatataatatgttttt-taaaatagattaagtgtgat 384  Q
    |||| |||||||||||| || ||||||| |||||||| ||||||| ||||||||||||    
T  35248738 tttcttttttaaattacggactatataacatgtttttctaaaataaattaagtgtgat 35248795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 384
Target Start/End: Original strand, 6891405 - 6891469
Alignment:
Q  321 gtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagattaagtgtgat 384  Q
    |||||| |||| |||||||| |||| | ||||||| |||||||| ||||||| ||||||||||||    
T  6891405 gtttatttttcttttttaaaatacaaattatataacatgtttttctaaaataaattaagtgtgat 6891469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 384
Target Start/End: Original strand, 36151637 - 36151685
Alignment:
Q  337 taaattacagaatatataatatgttttt-taaaatagattaagtgtgat 384  Q
    ||||||||||| ||||||| |||||||| ||||||| ||||||||||||    
T  36151637 taaattacagactatataacatgtttttctaaaataaattaagtgtgat 36151685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 274 - 381
Target Start/End: Complemental strand, 16738242 - 16738134
Alignment:
Q  274 ttaagggcgtgtttggattgagggtttaggaggcgaaggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatag 372  Q
    |||||||  |||||||||||||||||||||| | ||||||| || | |||||  |||| ||||||||||||||| ||||||| |||||||| |||||||     
T  16738242 ttaagggtttgtttggattgagggtttaggatgggaaggaggggagagtttacttttcttttttaaattacagattatataaaatgtttttctaaaataa 16738143  T
Q  373 attaagtgt 381  Q
    | |||||||    
T  16738142 agtaagtgt 16738134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 12811224 - 12811115
Alignment:
Q  277 agggcgtgtttggattgagggtttaggaggcgaag-gagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagat 374  Q
    |||| ||||||||||||||||||||||| | |||| ||| || ||| |||  |||| | ||||||||| ||| |||||||||||||||| ||||||| ||    
T  12811224 agggtgtgtttggattgagggtttaggatgggaagagaggggagggattacttttcttctttaaattagagactatataatatgtttttctaaaataaat 12811125  T
Q  375 taagtgtgat 384  Q
    ||||||||||    
T  12811124 taagtgtgat 12811115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 384
Target Start/End: Original strand, 2893635 - 2893739
Alignment:
Q  282 gtgtttggattgagggtttaggaggcgaag-gagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagattaagt 379  Q
    ||||||||||||||||||| ||| | |||  |||||| | |||||  ||||||||||||| |||||| ||||||| |||||||| ||||||| |||||||    
T  2893635 gtgtttggattgagggtttgggaagggaaatgagcggagagtttacttttcgtttttaaactacagactatataacatgtttttctaaaataaattaagt 2893734  T
Q  380 gtgat 384  Q
    |||||    
T  2893735 gtgat 2893739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 384
Target Start/End: Complemental strand, 9719269 - 9719166
Alignment:
Q  282 gtgtttggattgagggtttaggaggcgaag-gagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttttaaaatagattaagtg 380  Q
    |||||||||||||||||||| |||| |||| ||| ||||||||||  |||| |||||||||| | || ||||||| ||| |||||||| || ||| ||||    
T  9719269 gtgtttggattgagggtttatgaggggaagagaggggtgggtttaattttcttttttaaattccggactatataacatgctttttaaattaaatttagtg 9719170  T
Q  381 tgat 384  Q
    ||||    
T  9719169 tgat 9719166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 383
Target Start/End: Complemental strand, 21607083 - 21606980
Alignment:
Q  282 gtgtttggattgagggtttaggaggcgaag-gagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagattaagt 379  Q
    ||||||||||||||||||||||||| |||| |||  |   ||||| ||||||||||||||||||| | ||||| |||||||||| ||||||| || ||||    
T  21607083 gtgtttggattgagggtttaggaggggaagagagatgaatgtttacatttcgtttttaaattacaaactatattatatgtttttctaaaataaataaagt 21606984  T
Q  380 gtga 383  Q
    ||||    
T  21606983 gtga 21606980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 383
Target Start/End: Original strand, 14515471 - 14515579
Alignment:
Q  275 taagggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttttaaaataga 373  Q
    |||||| ||||||||||||||||||||||||| ||| |||| || |||||| | |||| |||||||||||| || || ||||| | || | ||||||| |    
T  14515471 taagggtgtgtttggattgagggtttaggaggggaagggaggggagggtttgtttttcttttttaaattacggactagataatgt-ttctctaaaataaa 14515569  T
Q  374 ttaagtgtga 383  Q
    ||||||||||    
T  14515570 ttaagtgtga 14515579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 363
Target Start/End: Original strand, 10818224 - 10818316
Alignment:
Q  272 ttttaagggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgtttt 363  Q
    ||||||||| ||||||||||||||||||||||||| ||| |||| ||   |||||| |||| |||||||||||| ||  |||||| |||||||    
T  10818224 ttttaagggtgtgtttggattgagggtttaggaggggaagggaggggattgtttatttttcttttttaaattacggacaatataacatgtttt 10818316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 384
Target Start/End: Complemental strand, 19278276 - 19278173
Alignment:
Q  282 gtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagattaagt 379  Q
    |||||||||||||| |||||||||| ||| |||| || |||||||| |||| |||||||||||| || ||||||| |||||||| ||||||| ||| |||    
T  19278276 gtgtttggattgagagtttaggaggggaagggaggggagggtttat-tttcttttttaaattacggactatataacatgtttttctaaaataaatttagt 19278178  T
Q  380 gtgat 384  Q
     ||||    
T  19278177 ctgat 19278173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 384
Target Start/End: Original strand, 33041475 - 33041579
Alignment:
Q  282 gtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatg-ttttttaaaatagattaagt 379  Q
    |||||||||||| |||||||||||  ||| |||| || |  ||||| |||| ||||||||||| ||| |||||||| || |||||||||||| |||||||    
T  33041475 gtgtttggattgggggtttaggagaggaaaggaggggagaatttatttttcatttttaaattatagactatataatgtgtttttttaaaataaattaagt 33041574  T
Q  380 gtgat 384  Q
    |||||    
T  33041575 gtgat 33041579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 344
Target Start/End: Original strand, 9721135 - 9721206
Alignment:
Q  274 ttaagggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattac 344  Q
    ||||||| ||||||||||||| ||||||||||| ||| |||| || |||||||| |||| ||||||||||||    
T  9721135 ttaagggtgtgtttggattgaaggtttaggaggggaagggaggggagggtttatttttcatttttaaattac 9721206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 384
Target Start/End: Complemental strand, 30487544 - 30487440
Alignment:
Q  282 gtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagattaagt 379  Q
    |||||| |||||||||||||||||| ||| |||| || |||||||  |||  |||||||| ||| || ||||||| |||||||| ||||||| || ||||    
T  30487544 gtgtttcgattgagggtttaggaggggaagggagtggagggtttagttttattttttaaactacggactatataacatgtttttataaaataaatcaagt 30487445  T
Q  380 gtgat 384  Q
    |||||    
T  30487444 gtgat 30487440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 384
Target Start/End: Original strand, 31849115 - 31849219
Alignment:
Q  282 gtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagattaagt 379  Q
    ||||| |||||||||||||| |||| ||| |||| || |||||||  |||| |||||||| |||||| ||||||| || ||||| ||||||| || ||||    
T  31849115 gtgttaggattgagggtttaagaggggaagggaggggagggtttagttttcttttttaaactacagactatataacatatttttctaaaataaatcaagt 31849214  T
Q  380 gtgat 384  Q
    |||||    
T  31849215 gtgat 31849219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 344
Target Start/End: Original strand, 9719036 - 9719099
Alignment:
Q  282 gtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattac 344  Q
    ||||||||||||||||||||||||| ||| |||| || || ||||| |||| ||||||||||||    
T  9719036 gtgtttggattgagggtttaggaggggaagggaggggaggatttatttttcatttttaaattac 9719099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 384
Target Start/End: Original strand, 13583777 - 13583828
Alignment:
Q  334 ttttaaattacagaatatataatatgttttt-taaaatagattaagtgtgat 384  Q
    |||||||||||||| ||||||| |||||||| ||||||| ||||||||||||    
T  13583777 ttttaaattacagattatataacatgtttttctaaaataaattaagtgtgat 13583828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 4097233 - 4097271
Alignment:
Q  275 taagggcgtgtttggattgagggtttaggaggcgaagga 313  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  4097233 taagggtgtgtttggattgagggtttaggaggggaagga 4097271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 15323219 - 15323260
Alignment:
Q  271 attttaagggcgtgtttggattgagggtttaggaggcgaagg 312  Q
    ||||| |||| ||||||||||||||||||||||||| |||||    
T  15323219 atttttagggtgtgtttggattgagggtttaggaggggaagg 15323260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 15353358 - 15353399
Alignment:
Q  271 attttaagggcgtgtttggattgagggtttaggaggcgaagg 312  Q
    ||||| |||| ||||||||||||||||||||||||| |||||    
T  15353358 atttttagggtgtgtttggattgagggtttaggaggggaagg 15353399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 23090990 - 23091030
Alignment:
Q  272 ttttaagggcgtgtttggattgagggtttaggaggcgaagg 312  Q
    ||||||||| ||||||||||||| ||||||||||| |||||    
T  23090990 ttttaagggtgtgtttggattgaaggtttaggaggggaagg 23091030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 274 - 384
Target Start/End: Complemental strand, 25655219 - 25655107
Alignment:
Q  274 ttaagggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaata 371  Q
    ||||||| |||||||||||||||||| | |||| ||| |||| || |||||||  |||| |||||||||||| || ||||||| |||||||| |||||||    
T  25655219 ttaagggtgtgtttggattgagggttgaagaggagaagggaggggagggtttaactttcatttttaaattacggactatataacatgtttttctaaaata 25655120  T
Q  372 gattaagtgtgat 384  Q
     ||||||||||||    
T  25655119 aattaagtgtgat 25655107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 384
Target Start/End: Original strand, 24560215 - 24560326
Alignment:
Q  275 taagggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatag 372  Q
    |||||| ||||||||||| ||||||||||||| ||| |||| || |||||| | |||| |||||||||||| || ||| ||| |||||||| |||||||     
T  24560215 taagggtgtgtttggattaagggtttaggaggggaagggaggggagggtttgtttttcttttttaaattacggactatgtaacatgtttttctaaaataa 24560314  T
Q  373 attaagtgtgat 384  Q
    ||||| ||||||    
T  24560315 attaaatgtgat 24560326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 384
Target Start/End: Complemental strand, 41110571 - 41110456
Alignment:
Q  271 attttaagggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaa 368  Q
    |||||||||| |||||||||||||||||||  |||| ||| |||| ||  ||||||  ||||||||||||||||| || || |||| ||||||||  |||    
T  41110571 attttaagggtgtgtttggattgagggtttgtgaggggaagggagaggaaggtttacttttcgtttttaaattacggactagataacatgtttttcgaaa 41110472  T
Q  369 atagattaagtgtgat 384  Q
    ||| ||||||||||||    
T  41110471 ataaattaagtgtgat 41110456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 384
Target Start/End: Original strand, 651738 - 651840
Alignment:
Q  275 taagggcgtgtttggattgagggtttaggaggcgaaggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaataga 373  Q
    |||||| ||||||||||||||||||||||||| | |||        |||||  |||| ||||||||||| ||| ||||||| |||||||| ||||||| |    
T  651738 taagggtgtgtttggattgagggtttaggagggggagg--------gtttacttttcttttttaaattatagactatataacatgtttttctaaaataaa 651829  T
Q  374 ttaagtgtgat 384  Q
    |||||||||||    
T  651830 ttaagtgtgat 651840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 384
Target Start/End: Original strand, 14897981 - 14898085
Alignment:
Q  282 gtgtttggattgagggtttaggaggcgaagg-agcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagattaagt 379  Q
    |||||||||||||| |||||||||| ||||| || ||    ||||  |||| ||||||||||||||| ||||| | |||||||| ||||||| |||||||    
T  14897981 gtgtttggattgagagtttaggaggggaagggagaggaaattttacttttcttttttaaattacagactatatgacatgtttttctaaaataaattaagt 14898080  T
Q  380 gtgat 384  Q
    |||||    
T  14898081 gtgat 14898085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 384
Target Start/End: Complemental strand, 6803449 - 6803336
Alignment:
Q  273 tttaagggcgtgtttggattgagggtttaggaggcgaag-gagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaat 370  Q
    |||||| | ||||||||||||| ||||||||||| |||| |||  | | |||||  |||| ||||||||||||||| |||  |||| |||||| ||||||    
T  6803449 tttaagtgtgtgtttggattgaaggtttaggaggggaagagaggagagagtttaattttcttttttaaattacagactatgcaataagtttttataaaat 6803350  T
Q  371 agattaagtgtgat 384  Q
    | |||| |||||||    
T  6803349 aaattatgtgtgat 6803336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 46556195 - 46556252
Alignment:
Q  328 tttcgtttttaaattacagaatatataatatgttttt-taaaatagattaagtgtgat 384  Q
    |||| ||||||||||||||| ||||||||||||||||  |||||| ||| ||||||||    
T  46556195 tttcttttttaaattacagactatataatatgtttttccaaaataaattgagtgtgat 46556252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 306
Target Start/End: Complemental strand, 9312716 - 9312684
Alignment:
Q  274 ttaagggcgtgtttggattgagggtttaggagg 306  Q
    ||||||| |||||||||||||||||||||||||    
T  9312716 ttaagggagtgtttggattgagggtttaggagg 9312684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 10748484 - 10748432
Alignment:
Q  333 tttttaaattacagaatatataatatgttttt-taaaatagattaagtgtgat 384  Q
    |||||||||||| || ||||||| |||||||| ||||||| ||||||||||||    
T  10748484 tttttaaattacggagtatataacatgtttttctaaaataaattaagtgtgat 10748432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 364
Target Start/End: Complemental strand, 28582753 - 28582665
Alignment:
Q  277 agggcgtgtttggattgagggtttaggaggcgaagg-agcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt 364  Q
    |||| ||||||||| ||||| ||||||||| ||||| || || |||||||  |||| |||||||||||| ||  |||||| ||||||||    
T  28582753 agggtgtgtttggactgaggatttaggaggggaagggaggggagggtttacttttcttttttaaattacggacgatataacatgttttt 28582665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 384
Target Start/End: Original strand, 12234005 - 12234119
Alignment:
Q  272 ttttaagggcgtgtttggattgagggtttaggaggcgaaggagcggt-gggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaa 369  Q
    ||||||||| ||||||||||||||||||||||||| |||||   ||| ||| |||  |||| |||||||||||| || ||||||| |||||||| |||||    
T  12234005 ttttaagggtgtgtttggattgagggtttaggaggggaagggagggtagggcttaattttcttttttaaattacggactatataacatgtttttctaaaa 12234104  T
Q  370 tagattaagtgtgat 384  Q
    || || |||||||||    
T  12234105 taaatcaagtgtgat 12234119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 275 - 384
Target Start/End: Complemental strand, 40095180 - 40095068
Alignment:
Q  275 taagggcgtgtttggattgagggtttaggaggcgaaggagcggt-gggtttatatttcgtttttaaattacagaatatataatatgttttt--taaaata 371  Q
    |||||| ||||||||||||||||||||| |||  ||||   ||  |||||||  |||||||||||||||||||| ||||||| ||||||||  |||||||    
T  40095180 taagggtgtgtttggattgagggtttagaaggaaaagggaaggaagggtttacttttcgtttttaaattacagactatataacatgttttttctaaaata 40095081  T
Q  372 gattaagtgtgat 384  Q
     ||||||||||||    
T  40095080 aattaagtgtgat 40095068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 382
Target Start/End: Original strand, 30010332 - 30010439
Alignment:
Q  277 agggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagat 374  Q
    |||| ||||||||||||||||||||||||| ||| |||| || || ||||  |||| | |||||||||| || ||||||| |||||||| ||||||| ||    
T  30010332 agggtgtgtttggattgagggtttaggaggggaagggaggggaggatttacttttcttgtttaaattacggactatataacatgtttttctaaaataaat 30010431  T
Q  375 taagtgtg 382  Q
    ||||||||    
T  30010432 taagtgtg 30010439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 41498401 - 41498471
Alignment:
Q  274 ttaagggcgtgtttggattgagggtttaggaggcgaag-gagcggtgggtttatatttcgtttttaaatta 343  Q
    ||||||| ||||||||||||||||||||||||| |||| ||| || |||||||  ||||||||||||||||    
T  41498401 ttaagggtgtgtttggattgagggtttaggaggggaagtgaggggagggtttacttttcgtttttaaatta 41498471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 32951562 - 32951453
Alignment:
Q  277 agggcgtgtttggattgagggtttaggaggcgaagg-agcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagat 374  Q
    |||| |||||||||||||| |||||||||  ||||| || || | |||||  ||||||||||||||||| || |||| || |||||||| ||||||| ||    
T  32951562 agggtgtgtttggattgagagtttaggagaggaagggaggggagagtttacttttcgtttttaaattacggactatagaacatgtttttctaaaataaat 32951463  T
Q  375 taagtgtgat 384  Q
    ||||||||||    
T  32951462 taagtgtgat 32951453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 384
Target Start/End: Complemental strand, 38510133 - 38510029
Alignment:
Q  282 gtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagattaagt 379  Q
    ||||||||||| ||||||||||||| ||| |||| || |||||||  |||| |||||||| ||| || ||||||| |||||||| ||||||| || ||||    
T  38510133 gtgtttggattaagggtttaggaggggaagggaggggagggtttagttttcttttttaaactacggactatataacatgtttttctaaaataaatcaagt 38510034  T
Q  380 gtgat 384  Q
    |||||    
T  38510033 gtgat 38510029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 384
Target Start/End: Complemental strand, 2859169 - 2859067
Alignment:
Q  284 gtttggattgagggtttaggaggcgaagg-agcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagattaagtgt 381  Q
    ||||||||||| ||||||||||| ||||| || || |||||||  |||  |||||||||||| || ||||||| ||||||||  |||||| |||||||||    
T  2859169 gtttggattgaaggtttaggaggggaagggaggggagggtttacttttattttttaaattacggactatataacatgtttttcaaaaataaattaagtgt 2859070  T
Q  382 gat 384  Q
    |||    
T  2859069 gat 2859067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 364
Target Start/End: Complemental strand, 35349706 - 35349618
Alignment:
Q  277 agggcgtgtttggattgagggtttaggaggcgaagg-agcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt 364  Q
    |||| ||||||||||| |||||||| |||| ||||| || || |||||||  ||||||||||||||||| || ||||||| || |||||    
T  35349706 agggtgtgtttggattaagggtttatgaggggaagggaggggagggtttacttttcgtttttaaattacggactatataacattttttt 35349618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 384
Target Start/End: Original strand, 10391880 - 10391981
Alignment:
Q  285 tttggattgagggtttaggaggcg-aaggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagattaagtgtg 382  Q
    |||||||||||| ||||||||| | || ||| || |||||||  |||| |||||||||||| || ||||| | |||||||| ||||||| ||||| ||||    
T  10391880 tttggattgaggttttaggaggggaaacgaggggagggtttacttttcatttttaaattacggactatattacatgtttttctaaaataaattaattgtg 10391979  T
Q  383 at 384  Q
    ||    
T  10391980 at 10391981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 26324013 - 26324049
Alignment:
Q  276 aagggcgtgtttggattgagggtttaggaggcgaagg 312  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  26324013 aagggtgtgtttggattgagggtttaggaggggaagg 26324049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 344
Target Start/End: Original strand, 40094933 - 40095001
Alignment:
Q  277 agggcgtgtttggattgagggtttaggaggcgaagg-agcggtgggtttatatttcgtttttaaattac 344  Q
    |||| |||||||||| |||||||||||||| ||||| || || |||||||  |||| ||||||||||||    
T  40094933 agggtgtgtttggatggagggtttaggaggggaaggaaggggagggtttacttttcatttttaaattac 40095001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 36347785 - 36347676
Alignment:
Q  277 agggcgtgtttggattgagggtttaggaggcgaagg-agcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagat 374  Q
    |||| ||||||||||||||||||||||||| ||||| |  || | |||||  |||| |||||||||||| || ||||||| |||||||| ||||||| ||    
T  36347785 agggtgtgtttggattgagggtttaggaggggaagggaagggagagtttacttttcttttttaaattacggactatataacatgtttttctaaaataaat 36347686  T
Q  375 taagtgtgat 384  Q
    ||||||||||    
T  36347685 taagtgtgat 36347676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 273 - 384
Target Start/End: Complemental strand, 19567064 - 19566956
Alignment:
Q  273 tttaagggcgtgtttggattgagggtttaggaggcgaaggagcggtgggtttatatttc-gtttttaaattacagaatatataatatgttttt-taaaat 370  Q
    |||||| | ||||||||||||||||||||||||    ||||| || ||||||| |||||  |||||||||||| || ||||||| |||||||| ||||||    
T  19567064 tttaagagtgtgtttggattgagggtttaggag----aggaggggagggttta-atttcattttttaaattacggactatataacatgtttttctaaaat 19566970  T
Q  371 agattaagtgtgat 384  Q
    | ||||||||||||    
T  19566969 aaattaagtgtgat 19566956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 380
Target Start/End: Complemental strand, 8427113 - 8427010
Alignment:
Q  279 ggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagatta 376  Q
    ||||||||||||||||||||||||||||  || |||| || | |||||  |||| |||||||| ||||||  |||||| |||||||| ||||||| ||||    
T  8427113 ggcgtgtttggattgagggtttaggagggaaagggaggggagagtttacttttcatttttaaagtacagacgatataacatgtttttctaaaataaatta 8427014  T
Q  377 agtg 380  Q
    ||||    
T  8427013 agtg 8427010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 383
Target Start/End: Original strand, 35736175 - 35736283
Alignment:
Q  277 agggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagat 374  Q
    |||| ||||||||||||||||||||||||| ||| |||| || ||| |||  |||| ||||||||| || || || |||| |||||||| ||||||| ||    
T  35736175 agggtgtgtttggattgagggtttaggaggggaagggaggggaggggttaattttcttttttaaatcacggactagataacatgtttttctaaaataaat 35736274  T
Q  375 taagtgtga 383  Q
     ||||||||    
T  35736275 gaagtgtga 35736283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 384
Target Start/End: Complemental strand, 15224940 - 15224829
Alignment:
Q  275 taagggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatag 372  Q
    |||||| ||||||||||  ||||||||||||| ||| |||| ||  ||||||  |||| |||||||||||| |  ||||||| |||||||| || ||||     
T  15224940 taagggtgtgtttggatcaagggtttaggaggggaagggaggggatggtttacttttcttttttaaattacgggctatataacatgtttttctagaataa 15224841  T
Q  373 attaagtgtgat 384  Q
    ||||||||||||    
T  15224840 attaagtgtgat 15224829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 384
Target Start/End: Complemental strand, 29525931 - 29525868
Alignment:
Q  322 tttatatttcgtttttaaattacagaatatataatatgtt-ttttaaaatagattaagtgtgat 384  Q
    ||||| |||| ||||||||| || |||||||||||||||| |||||||||| ||||| ||||||    
T  29525931 tttatttttcttttttaaatcacggaatatataatatgtttttttaaaataaattaaatgtgat 29525868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 17380088 - 17380051
Alignment:
Q  274 ttaagggcgtgtttggattgagggtttaggaggcgaag 311  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  17380088 ttaagggtgtgtttggattgagggtttaggaggggaag 17380051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 344
Target Start/End: Complemental strand, 22356253 - 22356180
Alignment:
Q  272 ttttaagggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattac 344  Q
    |||| |||| ||||||||||||||| ||||||||| ||| |||| || ||||| || |||| ||||||||||||    
T  22356253 tttttagggtgtgtttggattgaggatttaggaggggaagggaggggagggttcatttttcttttttaaattac 22356180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 18811381 - 18811437
Alignment:
Q  328 tttcgtttttaaattacagaatatataatatgttttttaaaatagattaagtgtgat 384  Q
    |||| |||||||||||||| |  |||||  |||||||||||||| ||||||||||||    
T  18811381 tttcttttttaaattacagtaactataaagtgttttttaaaataaattaagtgtgat 18811437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 384
Target Start/End: Complemental strand, 39437 - 39325
Alignment:
Q  274 ttaagggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaata 371  Q
    ||||||| ||||||||||||||||||||| |||  || |||| || |||||||  |||| |||||||||||| || ||| ||| |||||||| |||||||    
T  39437 ttaagggtgtgtttggattgagggtttagaagggaaagggaggggagggtttacttttcttttttaaattacggactatgtaacatgtttttctaaaata 39338  T
Q  372 gattaagtgtgat 384  Q
     ||||||||||||    
T  39337 aattaagtgtgat 39325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 384
Target Start/End: Original strand, 6315064 - 6315171
Alignment:
Q  275 taagggcgtgtttggattgagggtttaggaggcgaaggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaataga 373  Q
    |||||| ||||||||||||||||||||||||||||||||| |  |  |||| |||   ||||| |||||| || ||||||| |||||||| ||||||| |    
T  6315064 taagggtgtgtttggattgagggtttaggaggcgaaggagggaggaatttacatt---ttttttaattacggactatataacatgtttttctaaaataaa 6315160  T
Q  374 ttaagtgtgat 384  Q
    |||||||||||    
T  6315161 ttaagtgtgat 6315171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 384
Target Start/End: Complemental strand, 11575645 - 11575541
Alignment:
Q  282 gtgtttggattgagggtttaggaggcgaagg-agcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagattaagt 379  Q
    ||||||||||| ||||||||||| | ||||| || || |||||||  |||| ||||||||||||| | ||||||| |||||||| ||||||| |||||||    
T  11575645 gtgtttggattcagggtttaggatgagaagggaggggagggtttacttttcatttttaaattacaaattatataacatgtttttctaaaataaattaagt 11575546  T
Q  380 gtgat 384  Q
    |||||    
T  11575545 gtgat 11575541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 7503198 - 7503089
Alignment:
Q  277 agggcgtgtttggattgagggtttaggaggcgaagg-agcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagat 374  Q
    |||| ||||||||||||||| ||| ||||| || || || || |||||||  ||||||||||||||||  || ||||||| |||||||| ||||||| ||    
T  7503198 agggtgtgtttggattgaggctttgggaggggaggggaggggagggtttacttttcgtttttaaattatggattatataacatgtttttctaaaataaat 7503099  T
Q  375 taagtgtgat 384  Q
    ||||||||||    
T  7503098 taagtgtgat 7503089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 31543316 - 31543207
Alignment:
Q  277 agggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagat 374  Q
    |||| |||||| |||||||||||||||||| ||| |||| || |||||||  |||| |||||||||||  ||  |||||| |||||||| ||||||| ||    
T  31543316 agggtgtgtttcgattgagggtttaggaggggaagggaggggagggtttacttttcttttttaaattatggaccatataacatgtttttctaaaataaat 31543217  T
Q  375 taagtgtgat 384  Q
    ||||||||||    
T  31543216 taagtgtgat 31543207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 42650528 - 42650471
Alignment:
Q  328 tttcgtttttaaattacagaatatataatatgttttt-taaaatagattaagtgtgat 384  Q
    ||||||||||||||||| |||||||||| |||||||| ||||||| ||||||||||||    
T  42650528 tttcgtttttaaattacggaatatataacatgtttttctaaaataaattaagtgtgat 42650471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 321 - 384
Target Start/End: Original strand, 37032424 - 37032488
Alignment:
Q  321 gtttatatttcgtttttaaattacagaatatataatatg-ttttttaaaatagattaagtgtgat 384  Q
    |||||| |||| ||||||||||||||| ||||||| ||| |||||||||||| ||||||||||||    
T  37032424 gtttatttttcttttttaaattacagactatataacatgtttttttaaaataaattaagtgtgat 37032488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 384
Target Start/End: Complemental strand, 30479956 - 30479852
Alignment:
Q  282 gtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagattaagt 379  Q
    |||||||||||||||||||| |||  ||| ||||||| |||||||  |||| |||||||| |||||| |||||   |||||||| ||||||| || ||||    
T  30479956 gtgtttggattgagggtttatgagaggaatggagcggagggtttagttttcttttttaaactacagactatatgtcatgtttttctaaaataaatcaagt 30479857  T
Q  380 gtgat 384  Q
    |||||    
T  30479856 gtgat 30479852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 312
Target Start/End: Original strand, 43732677 - 43732714
Alignment:
Q  275 taagggcgtgtttggattgagggtttaggaggcgaagg 312  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  43732677 taagggtgtgtttggattgagggtttaggaggggaagg 43732714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 380
Target Start/End: Original strand, 7979145 - 7979245
Alignment:
Q  282 gtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagattaagt 379  Q
    ||||||||||||||||||||| ||  ||| |||| || | |||||  |||| |||||||||||| || ||||||| |||||||| ||||||| || ||||    
T  7979145 gtgtttggattgagggtttagaagaggaagggagaggagagtttacttttcttttttaaattacggactatataacatgtttttctaaaataaatcaagt 7979244  T
Q  380 g 380  Q
    |    
T  7979245 g 7979245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 306
Target Start/End: Complemental strand, 8815388 - 8815356
Alignment:
Q  274 ttaagggcgtgtttggattgagggtttaggagg 306  Q
    ||||||| |||||||||||||||||||||||||    
T  8815388 ttaagggtgtgtttggattgagggtttaggagg 8815356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 11033419 - 11033526
Alignment:
Q  277 agggcgtgtttggattgagggtttaggaggcgaaggagcggtgggtttatatttcgtttttaaattacagaatatataatatgttttt-taaaatagatt 375  Q
    |||| ||||||||||||||||||||| ||  ||||| | || |||||||  |||| ||||||||| || || ||||||  |||||||| ||||||| |||    
T  11033419 agggtgtgtttggattgagggtttagaagaggaagg-gaggggggtttacttttcttttttaaataacggactatatatcatgtttttctaaaataaatt 11033517  T
Q  376 aagtgtgat 384  Q
    | |||||||    
T  11033518 atgtgtgat 11033526  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 344
Target Start/End: Complemental strand, 31738667 - 31738599
Alignment:
Q  277 agggcgtgtttggattgagggtttaggaggcgaag-gagcggtgggtttatatttcgtttttaaattac 344  Q
    |||| |||||||||| |||||||||||||| ||||  || || ||||||| ||||| ||||||||||||    
T  31738667 agggtgtgtttggatggagggtttaggaggggaagaaaggggagggtttaaatttcatttttaaattac 31738599  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 380
Target Start/End: Complemental strand, 37923265 - 37923217
Alignment:
Q  333 tttttaaattacagaatatataatatgttttt-taaaatagattaagtg 380  Q
    ||||||||||||||| ||||||| |||||||| ||||||| ||||||||    
T  37923265 tttttaaattacagactatataacatgtttttctaaaataaattaagtg 37923217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 344
Target Start/End: Complemental strand, 43732931 - 43732863
Alignment:
Q  277 agggcgtgtttggattgagggtttaggaggcgaa-ggagcggtgggtttatatttcgtttttaaattac 344  Q
    |||| |||||||||| |||||||||||||| ||| |||| || |||||||  |||| ||||||||||||    
T  43732931 agggtgtgtttggatggagggtttaggaggggaagggaggggagggtttacttttcttttttaaattac 43732863  T

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Target: scaffold0096 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 6584 - 6693
Alignment:
Q  277 agggcgtgtttggattgagggtttaggaggcgaagg-agcggtgggtttatatttcgtttttaaattacagaatatataatatgtt-ttttaaaatagat 374  Q
    |||| ||||||||||||| | ||||||||| ||||| || || |||||||  |||| ||||||||||||||| |||||||  |||| || ||||||| ||    
T  6584 agggtgtgtttggattgaagttttaggaggagaagggaggggagggtttacttttcttttttaaattacagactatataacttgttattctaaaataaat 6683  T
Q  375 taagtgtgat 384  Q
    | ||||||||    
T  6684 ttagtgtgat 6693  T

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Target: scaffold0026 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 361
Target Start/End: Original strand, 1177 - 1257
Alignment:
Q  282 gtgtttggattgagggtttaggaggcgaag-gagcggtgggtttatatttcgtttttaaattacagaatatataatatgtt 361  Q
    ||||||||||||||||||||||||| |||| ||| || | |||||  |||| |||||||||||| || ||| ||| |||||    
T  1177 gtgtttggattgagggtttaggaggggaagagaggggagagtttacttttcttttttaaattacggactatgtaacatgtt 1257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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