View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14474_low_17 (Length: 375)
Name: NF14474_low_17
Description: NF14474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14474_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 5 - 359
Target Start/End: Complemental strand, 38345318 - 38344961
Alignment:
| Q |
5 |
atggacatcatcaccctcagttgtcaattcaatgtgtcttcaattcaacgttacttcctcattcccagccatcgagaaaacgactatcacaacaaataag |
104 |
Q |
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| T |
38345318 |
atggccataatcaccctcagttgtcaattcaatgtgtcttcaattcaacgttacttcctcattcccagccatcgagaaaacgactatcaaaacaaataag |
38345219 |
T |
|
| Q |
105 |
tgtaacacgataacacatccttttcctttgtacgtaccatcatcatcacagtgtctagtcctcaaattcactccttcaatctcacccattgcatataatt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38345218 |
tgtaacacgataacacatccttttcctttgtacgtaccatcatcatcacagtgtctagtcctcacattcactccttcaatctcacccattgcatataatt |
38345119 |
T |
|
| Q |
205 |
catgtataatcagtttattatcatatcataattatttatagtga----attatgtatcatttccttaacnnnnnnnntagtaattatgtatcatattttc |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38345118 |
catgtataatcagtttattatgatatcataattatttatagtgaattaattatgtatcatttccttaac-aaaaaaatagtaattatgtatcatattttc |
38345020 |
T |
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| Q |
301 |
atgtacagcatacgtttgtattgaataaaaacatcataaagagctacggatgttcttcc |
359 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||| |
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| T |
38345019 |
atgtacagcatacgtttgtatagaataaaaacatcataaagggctatggatgttcttcc |
38344961 |
T |
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