View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14474_low_2 (Length: 712)
Name: NF14474_low_2
Description: NF14474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14474_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 86 - 697
Target Start/End: Original strand, 4387972 - 4388577
Alignment:
| Q |
86 |
tgcttctgtaaagaacttgttcctcggcttactatgttttgctttctccatgattcaacaaattgtttgattggagtcacaaaggaaggcagagcgacac |
185 |
Q |
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| T |
4387972 |
tgcttctgtaaagaacttgttcctcggcttactatgttttgctttctccatgattaaacaaattgtttgattggagtcacaaaggaaggcagagcgacac |
4388071 |
T |
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| Q |
186 |
aaatcaacacaatcattgatgagatgataggatcaacaaaagaggcacccataaaacacaaagaagtgtttggtgggcggaagaattttaannnnnnnnn |
285 |
Q |
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| T |
4388072 |
aaatcaacacaatcattgatgagatgataggatcaacaaa-gaggcacccataacacacaaagaagtgtttggtgggcggaagaattttaatttttttt- |
4388169 |
T |
|
| Q |
286 |
gtgtgttaagcttccggttcctaggggaagggggctcctagtaattaagaagttctaccgaaagttaagtaaagcttagcaaagaattgttcccaccaga |
385 |
Q |
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| T |
4388170 |
-tgtgttaagcttccggttcctaggggaagggggctcctagtaattaggaagttctaccgaaagttaagtaaagcttagcaaagaattgttcccaccaga |
4388268 |
T |
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| Q |
386 |
attcgaacttgtgctttgtttatcgataataatcatccaagcttatgtcacataaatcttacgaaaatacttacatgcatctcaaggaaaaaacaataaa |
485 |
Q |
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| T |
4388269 |
attcggacttgtgctttgtttatcgataataatcatccaagcttatgtcacataaatcttacgaaaatacttacat----ctcaaggaaaaaacaataaa |
4388364 |
T |
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| Q |
486 |
gcaagtgtcactgtttcggtttactcttcatgggatctatgacttggcaaaggaagctataaggagattggatgacaaaattgttgaggaagacgactaa |
585 |
Q |
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| T |
4388365 |
gcaagtgtcactgtttcggtttactcttcatgggatctatgacttggcaaaggaagctataaggagattggatggcaaaattgttgaggaagacaactaa |
4388464 |
T |
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| Q |
586 |
attgtcaattaggcaaagtatgatagaaagaagagcattctacatgaaaaacatgatagaaacaccaagagtgg-ggtaaattccaagactacatgtctt |
684 |
Q |
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| T |
4388465 |
attgtcaattaggcaaagtatgatagaaagaagagcattctacatgaaaaacatgatagaaacaccaagagtggtggtaaattccaagactacatgtctt |
4388564 |
T |
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| Q |
685 |
ttaaggatgcttt |
697 |
Q |
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| T |
4388565 |
ttaaggatgcttt |
4388577 |
T |
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