View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14474_low_20 (Length: 319)
Name: NF14474_low_20
Description: NF14474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14474_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 38 - 305
Target Start/End: Complemental strand, 3663318 - 3663057
Alignment:
| Q |
38 |
gagatatttccctcgagtatcataagtctacaaaatattataaagcatttcaaattattcaatgtgttccaatcctaatatgtttcaaattttccatggc |
137 |
Q |
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| T |
3663318 |
gagatatttccctcgagtatcataagtctacaaaatattataaagcatttcaaattattcaatgtgttccaatcctaatatgtttcaaattttccatggc |
3663219 |
T |
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| Q |
138 |
tatacaaactttaatttcaaagttaattattacttgcactagtaattttgaaagnnnnnnnnnctaaagatatattaataataattgtcaataaccatag |
237 |
Q |
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| T |
3663218 |
tatacaaactttaatttcaaagttaattattacttgcactagtaattttgaaa-----aaaagctaaagatatattaataataattgtcaataaccatag |
3663124 |
T |
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| Q |
238 |
cataagttatttaagaaaatnnnnnnngtgaatgaatcttacatgaataatccaaaaagccaatgaga |
305 |
Q |
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| T |
3663123 |
cataagttatttaagaaaat-aaaaaagtgaatgaatcttacatgaataatccaaaaagccaatgaga |
3663057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 3671475 - 3671386
Alignment:
| Q |
39 |
agatatttccctcgagtatcataagtctacaaaatattataaagcatttcaaattattcaatgtgttccaatcctaatatgtttcaaatt |
128 |
Q |
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|||||||||||||||||||||||||||||||||| | | | ||||||||||||||| |||||||||||||| |||| |||||||||||| |
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| T |
3671475 |
agatatttccctcgagtatcataagtctacaaaaggtaagagagcatttcaaattatgcaatgtgttccaattctaagatgtttcaaatt |
3671386 |
T |
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