View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14474_low_26 (Length: 241)
Name: NF14474_low_26
Description: NF14474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14474_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 2764547 - 2764757
Alignment:
| Q |
20 |
cacgcggatctctccagctcaacagtgcatgaatcctctcaccctggctagccaaatcacctacaaccgtttgtattctaccagccacactcctcaaacg |
119 |
Q |
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| T |
2764547 |
cacgcggatctctccagctcaacagtgcatgaatcctctcaccctggctagccaaatcacctacaacggtttgtattctaccagccacactcctcaaacg |
2764646 |
T |
|
| Q |
120 |
atcataccgcattcttacaaggtcgggatttttgcttgttggaaaagtatcaaattcctcatccatttcatcggggtgtactacatcagcttgtgagatt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2764647 |
atcataccgcattcttacaaggtcgggatttttgcttgttggaaaagtatcaaattcctcatccatttcatcggggtgtactacatcagcttgtgagatt |
2764746 |
T |
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| Q |
220 |
ctcgtgttcat |
230 |
Q |
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| T |
2764747 |
cttgtgttcat |
2764757 |
T |
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