View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14474_low_7 (Length: 548)
Name: NF14474_low_7
Description: NF14474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14474_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 12 - 530
Target Start/End: Original strand, 49461240 - 49461775
Alignment:
| Q |
12 |
agattattctcacaaaaatgtttggtaagttgttgatatttctagcgactttcttaaaagttttatagtcaaaaacttacattcccaagtccaacaagag |
111 |
Q |
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| T |
49461240 |
agattattctcacaaaaatgtttggtaagttgttgatatttctagcgactttcttaaaagttttatagtcaaaaacttacattcccaagtccaacaagag |
49461339 |
T |
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| Q |
112 |
aataaattattgcccagaatctataatcatgcatgagctccggattttcaaataaagatgcagatacatttttaaccgatgatcactcaatctatgatga |
211 |
Q |
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| T |
49461340 |
aataaattattgcccagaatctataatcatgcatgagctctggattttcaaataaaaatgcagatacatttttaaccgatgatcactcaatctatgatga |
49461439 |
T |
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| Q |
212 |
cccgtttgataaaacaaaataaagacaaactgcaacagttgtataacaatctacaagtagatttggcatcacatgcaactatcacaa--ttctttttgta |
309 |
Q |
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| T |
49461440 |
cccgtttgataaaacaaaataaagacaaactgcaacagttgtataacattctacaagtagatttggcatcaaatgcaactatcacaattttttttttgta |
49461539 |
T |
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| Q |
310 |
gataaatggaatgacaataaccaatggaaaactcaaacaaatgaggga---------------tgggtcacggtatccagtctaacaatttcaacatttg |
394 |
Q |
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| T |
49461540 |
gataaatggaatgacaataaccaattgaaaactcagacaactgagggatcccatgtttgaacctgagtcacggtatccagtctaacaatttcaacatttg |
49461639 |
T |
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| Q |
395 |
ctagttgaactatgacttgggaacacaccgatcatatttttatataagccattgatctttcaatcattaccattttctttacaaatttagagaattttac |
494 |
Q |
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| T |
49461640 |
ctagttgaactatgacttgggaacacaccgatcatattttcatacaagccattgatctttcaatcattacaattttctttacaaatttagagaattttac |
49461739 |
T |
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| Q |
495 |
atgaaccaagaaactcagacctctacataccttctt |
530 |
Q |
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| T |
49461740 |
atgaaccaagaaactcagacctctacataccttctt |
49461775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 397 - 495
Target Start/End: Original strand, 42175728 - 42175824
Alignment:
| Q |
397 |
agttgaactatgacttgggaacacaccgatcatatttttatataagccattgatctttcaatcattaccattttctttacaaatttagagaattttaca |
495 |
Q |
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| T |
42175728 |
agttgaactaggatttgtgaaagcaacgatcacatttttatataagttcttgatttttcaatcattacaattttcttt--aaatttagagaattttaca |
42175824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 42175352 - 42175396
Alignment:
| Q |
26 |
aaaatgtttggtaagttgttgatatttctagcgactttcttaaaa |
70 |
Q |
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| T |
42175352 |
aaaatgtttgggaagttattgatatttctagcaacttccttaaaa |
42175396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 413
Target Start/End: Complemental strand, 11012024 - 11011980
Alignment:
| Q |
369 |
atccagtctaacaatttcaacatttgctagttgaactatgacttg |
413 |
Q |
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| T |
11012024 |
atccagcctaacaatttcagcatttgctagttgagctaggacttg |
11011980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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