View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14474_low_9 (Length: 466)
Name: NF14474_low_9
Description: NF14474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14474_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 4e-85; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 207 - 448
Target Start/End: Complemental strand, 6251170 - 6250923
Alignment:
| Q |
207 |
gcttattctgttttttgaattcaaccttggatctgtgtttaggaaagaaattgataatgggtaggaaaagaaacgaggactgccggaaacacgttacaga |
306 |
Q |
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| T |
6251170 |
gcttattctgttttttgaattcaaccttggatctgtgtttaggaaagaaattgataatgggtaggaaaaaaaacgaggactgccggaaacacgttacaga |
6251071 |
T |
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| Q |
307 |
---agtagaaaa---taagaacacatggatatgcaattattgtaatgatatgtttagtggaggagcttctagaattgaagcacatctggggttgaatggc |
400 |
Q |
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| T |
6251070 |
aggagtagaaaatggtcataattattggatatgcaattattgtaatgagaagtatagtggaggagcttctagaattgaagcacaactgggtttgaatggc |
6250971 |
T |
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| Q |
401 |
aaaggaggaggcattatgcgatgctccaattatcatgaaggagtttac |
448 |
Q |
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| T |
6250970 |
aaaggaggaggcattaagccatgctccaaatatcatgaaggagtttac |
6250923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 248 - 448
Target Start/End: Complemental strand, 6183574 - 6183377
Alignment:
| Q |
248 |
ggaaagaaattgataatgggtaggaaaagaaacgaggactgccggaaacacgttacagaagtagaaaataagaacacatggatatgcaattattgtaatg |
347 |
Q |
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| T |
6183574 |
ggaaagatattgataatgggtagaaaaaaaaacgaggactgccggaaacacgttacagaagtagaaaataagaatacatggatatgcaattattgtagta |
6183475 |
T |
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| Q |
348 |
atatgtttagtggaggagcttctagaattgaagcacatctggggttgaatggcaaaggaggaggcattatgcgatgctccaattatcatgaaggagttta |
447 |
Q |
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| T |
6183474 |
ttgagtatagtggaggagcttctagaattgaagcacatctgggtttgaatggcaa---aggaggcattaggcgatgctccaaatatcatgaaggagttta |
6183378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 6251367 - 6251235
Alignment:
| Q |
12 |
atgaaaaccaattaatcgtgtacaaattttcaactagatcctattttttccatgaaaagaagaaaataaactagaattttctatgtaaattatatcggtc |
111 |
Q |
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| T |
6251367 |
atgaaaaccaattaatcgtgtacaaattttcaactagatcctattttttccatgaaaagaagaaaataaactaaatttttctatgtaaattatatcggtc |
6251268 |
T |
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| Q |
112 |
ggtaaagatcaaat--tagtaccaaaaaataag |
142 |
Q |
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| T |
6251267 |
ggtaaagatcaaattatagtaccaaaaaataag |
6251235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 291 - 434
Target Start/End: Complemental strand, 6210004 - 6209861
Alignment:
| Q |
291 |
ggaaacacgttacagaagtagaaaataagaacacatggatatgcaattattgtaatgatatgtttagtggaggagcttctagaattgaagcacatctggg |
390 |
Q |
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| T |
6210004 |
ggaaacacgttacagaagtagaaaatggtcgtaaatggatatgcaaatattgtaatgataagtttagtggaggagcttcaagaattgaagcacatctggg |
6209905 |
T |
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| Q |
391 |
gttgaatggcaaaggaggaggcattatgcgatgctccaattatc |
434 |
Q |
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| T |
6209904 |
gttgaatggcaaaggtggaggcattaggcgatgctccaattatc |
6209861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 232 - 445
Target Start/End: Complemental strand, 6111482 - 6111275
Alignment:
| Q |
232 |
cttggatctgtgtttaggaaagaaattgataatgggtaggaaaagaaacgaggactgccggaaacacgttacagaagtagaaaataagaacacatggata |
331 |
Q |
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| T |
6111482 |
cttggatctgtgtttaggaaagatattgataatgggtagaggaaaacacgagcactgctggaaacatgttacaagagtagaaaatggtcttaaatggata |
6111383 |
T |
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| Q |
332 |
tgcaattattgtaatgatatgtttagtggaggagcttctagaattgaagcacatctggggttgaatggcaaaggaggaggcattatgcgatgctccaatt |
431 |
Q |
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| T |
6111382 |
tgcaattattgtaatgataagtttagtggaggagcttctagaattcaaacacaccttgg------tggcaaaggaggaggcattaggcgatgctccaatt |
6111289 |
T |
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| Q |
432 |
atcatgaaggagtt |
445 |
Q |
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| T |
6111288 |
atcacgaaggagtt |
6111275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 6183841 - 6183721
Alignment:
| Q |
15 |
aaaaccaattaatcgtgtacaaattttcaactagatcctatttttt-ccatgaaaagaagaaaataaactagaattttctatgtaaattatatcggtcgg |
113 |
Q |
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| T |
6183841 |
aaaaccgattaatcgtgcacaaattttcaactagattctatttttttccatgaaaagaa---aataaactagatatttctttgtaaattatatcgatcag |
6183745 |
T |
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| Q |
114 |
taaagatcaaattagtaccaaaaa |
137 |
Q |
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| T |
6183744 |
tgaagatcaaattagtaccaaaaa |
6183721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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