View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14475_high_1 (Length: 830)
Name: NF14475_high_1
Description: NF14475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14475_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 630; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 5 - 812
Target Start/End: Complemental strand, 37037271 - 37036486
Alignment:
| Q |
5 |
tgtcgaagaatatgataccaaatatcgtttctctttttaagaatgtcaaactttttcattaccaatgcacgattagactaactttctagatactaagtta |
104 |
Q |
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| T |
37037271 |
tgtcgaaaaatatgatac-aaatatcgtttctctttttaaaaatgtcaaactttttcattaccaatgcacgattagactaactttcaagatactagttta |
37037173 |
T |
|
| Q |
105 |
acatttcccattaaaatataatcttatcctataattaagatagtagtagcatatatagcagtagcacacttctctgttctccaaagaatctcaaatataa |
204 |
Q |
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| T |
37037172 |
acatttcccattaaaatataatcttaccctataattaagatagtag---catatatagcagtagcacacttctctgttctccaaagaatctcaaatataa |
37037076 |
T |
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| Q |
205 |
taatcttgctcttattcttctttgctttctaccatttgcagaatggtcaaccaagaaaatctccttctttacgaaaaaatatggattaaacgcacacttc |
304 |
Q |
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| T |
37037075 |
taatcttgctcttattcttctttgctttctaccatttgcagaatggtcaaccaagaaaatctccttctttacgaaaaaatatggattaaacgcacacttc |
37036976 |
T |
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| Q |
305 |
aaagagcaatagacctcttgattctactccttttattttctcttctttgttaccgtattttcttcatcatcagcaacaaaaccttcacacttccatggtt |
404 |
Q |
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| T |
37036975 |
aaagagcaatagacctcttgattctactccttttattttctcttctttgttaccgtattttcttcatcatcagcaacaaaaccttcacaattccatggtt |
37036876 |
T |
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| Q |
405 |
tcttgcattctcatgtgaatcttggttcacatatacttggattattcttctcaacaccaaatggagtcctgctgttaccaaaacatatccaaaccgtctc |
504 |
Q |
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| T |
37036875 |
tcttgcattctcatgtgaatcttggttcacatatacttggattattcttctcaacaccaaatggagtcctgctgttaccaaaacatatccaaaccgtctc |
37036776 |
T |
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| Q |
505 |
cttcaacggtatgtaatataaactctcgtgtcacgatatttgatattcttataagttactgtctttactgtgtgtatgtaattgatgcaactcatcaaga |
604 |
Q |
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| T |
37036775 |
cttcaacggtatgcaatataaactctcgcgtcacgatatttgatattcttataagttactgtctttactgtgtgtatgtaatcgatgcaactcatc---- |
37036680 |
T |
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| Q |
605 |
gttgcagcgacatcaagattgatatcaaaattaatcttgatgttgcagtttatgccggtcgctgttaacaacatttccatgaagtcatgcaccgattttg |
704 |
Q |
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| T |
37036679 |
--------------aagattgatatcaaaattaatcttgatgttgcagtttatgccggtcgctgttaacaacatttccatgaagtcatgcaccgattttg |
37036594 |
T |
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| Q |
705 |
tattgctaattcnnnnnnnnnnnnnnnnnnnagattacctgagaatgagcttccatgtgtggatttgtttgtgacaacagcagatcctgtacttgaacca |
804 |
Q |
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| T |
37036593 |
tattgctaattcttttttcaattttttttttagattacctgagaatgagcttccatgtgtggatttgtttgtgacaacagcagatcctgtacttgaacca |
37036494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 241 - 558
Target Start/End: Complemental strand, 37046729 - 37046427
Alignment:
| Q |
241 |
tgcagaatggtcaaccaagaaaatctccttctttacgaaaaaatatggattaaacgcacacttcaaagagcaatagacctcttgattctactccttttat |
340 |
Q |
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| T |
37046729 |
tgcagaatggcaaaccaagaaaatctccctctgtatgaaaaaatatggatcaaacgaacatttcaaagagcaatagatatcttgattttactcctcctat |
37046630 |
T |
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| Q |
341 |
tttctcttctttgttaccgtattttcttcatcatcagcaacaaaaccttcacacttccatggtttcttgcattctcatgtgaatcttggttcacatatac |
440 |
Q |
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| T |
37046629 |
tctctcttctttgttaccgtat---------------caacgtcaccttcacaattccatggtttcttgcattctcatgtgaatcttggttcacatatac |
37046545 |
T |
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| Q |
441 |
ttggattattcttctcaacaccaaatggagtcctgctgttaccaaaacatatccaaaccgtctccttcaacggtatgtaatataaactctcgtgtcacga |
540 |
Q |
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| T |
37046544 |
ttggattattcttctcaacaccaaatggagtcctgctgttaacaaaacatatccaaaccgtctccttcaacggtatgtaatataaactctcgcgtcacga |
37046445 |
T |
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| Q |
541 |
tatttgatattcttataa |
558 |
Q |
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| T |
37046444 |
tatttgatattattataa |
37046427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 749 - 812
Target Start/End: Complemental strand, 37045889 - 37045826
Alignment:
| Q |
749 |
atgagcttccatgtgtggatttgtttgtgacaacagcagatcctgtacttgaaccaccaatcat |
812 |
Q |
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| T |
37045889 |
atgagcttccacgtgtggatttgtttgtgacaacagcagatcctgtacttgaaccaccaatcat |
37045826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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