View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14475_high_15 (Length: 369)
Name: NF14475_high_15
Description: NF14475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14475_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 44841101 - 44840918
Alignment:
| Q |
11 |
cacagactcatttcatgacattttgcattttgtcccgaacttcacgtttcgcgtggctctcactgctcttctcaccagtgatcaaagatagtgtggtttg |
110 |
Q |
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| T |
44841101 |
cacagactcatttcatgacattttgcattttgtcccgaacttcacgtttcgcgtggctctcactgctcttctcaccagtgatcaaagatagtgtggtttg |
44841002 |
T |
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| Q |
111 |
tgtagtttgcatgcttttttccttctctgctcataaaatgaaagnnnnnnntaataatagttagaaaacaagaaatgaaatgag |
194 |
Q |
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| T |
44841001 |
tgcagtttgcatgcttttttctttctctgcttataaaatgaaagaaaaaaataataatagttagaaaacaagaaatgaaatgag |
44840918 |
T |
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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 292 - 354
Target Start/End: Complemental strand, 44840820 - 44840758
Alignment:
| Q |
292 |
aacggttgtgatgaagcagtgtaaaaagtgaactagnnnnnnnccttttcggtctaagccttt |
354 |
Q |
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| T |
44840820 |
aacggttgtgatgaagcagtgtaaaaagtgaactagtttttttccttttcggtctaagccttt |
44840758 |
T |
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