View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14475_high_3 (Length: 573)

Name: NF14475_high_3
Description: NF14475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14475_high_3
NF14475_high_3
[»] chr1 (4 HSPs)
chr1 (129-550)||(18980134-18980553)
chr1 (17-129)||(18980595-18980707)
chr1 (215-301)||(1080494-1080576)
chr1 (136-301)||(2836484-2836652)
[»] chr7 (1 HSPs)
chr7 (498-545)||(21890939-21890986)
[»] chr4 (1 HSPs)
chr4 (330-401)||(22616717-22616788)
[»] chr3 (1 HSPs)
chr3 (498-545)||(41049404-41049451)


Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 129 - 550
Target Start/End: Complemental strand, 18980553 - 18980134
Alignment:
Q  129 tagtgtccttctatatgttgaacttctctttgagttttcattggtttttctacgaagccttaggacaaattcttccttgctcaaacctctcatctacatt 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18980553 tagtgtccttctatatgttgaacttctctttgagttttcattggtttttctacgaagccttaggacaaattcttccttgctcaaacctctcatctacatt 18980454  T
Q  229 ccaattaaattttaaacttaatgaattaattcacacaaaatttgatattcaaacagaaattgatcatagtcataannnnnnnnacctgtttcaagtcctc 328  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||        |||||||||||||||||    
T  18980453 ccaattaaattttaaacttaatgaattaattcacacaaaaattgatattcaaacagaaattgatc--agtcataattttttttacctgtttcaagtcctc 18980356  T
Q  329 ataatcactcaaattaaagtttatatcagcatcaactcccctaaacataacagcagccctatcatatgctctatacacaaaaattatcag-nnnnnnnna 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  18980355 ataatcactcaaattaaagtttatatcagcatcaactcccctaaacataacagcagccctatcatatgctctatacacaaaaattatcagtttttttttt 18980256  T
Q  428 aaatataagtagccaaaacaaattaaaatgcaaataatattactcaaatccactcaaaagaatagtccccaccttgcagcagcatgagcagtgtcaaatc 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18980255 aaatataagtagccaaaacaaattaaaatgcaaataatattactc-aatccactcaaaagaatagtccccaccttgcagcagcatgagcagtgtcaaatc 18980157  T
Q  528 cacctatcaaaatcaaatcaaat 550  Q
    |||||||||||||||||||||||    
T  18980156 cacctatcaaaatcaaatcaaat 18980134  T

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Target: chr1; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 18980707 - 18980595
Alignment:
Q  17 acaatttatatattgattgaaaataatgtatgcaaattttagtacattcacttgaaaaaatgtatatattgattgaaaataatagaggttctcactcttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18980707 acaatttatatattgattgaaaataatgtatgcaaattttagtacattcacttgaaaaaatgtatatattgattgaaaataatagaggttctcactcttt 18980608  T
Q  117 ggccacaaatggt 129  Q
    |||||||||||||    
T  18980607 ggccacaaatggt 18980595  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 301
Target Start/End: Original strand, 1080494 - 1080576
Alignment:
Q  215 ctctcatctacattccaattaaattttaaacttaatgaattaattcacacaaaatttgatattcaaacagaaattgatcatagtcat 301  Q
    ||||||||||||||| ||||||||| ||| |||| ||    ||| |||||| || ||||||||||||| |||| || ||||||||||    
T  1080494 ctctcatctacattctaattaaattataagcttattg----aatccacacacaaattgatattcaaacggaaactggtcatagtcat 1080576  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 301
Target Start/End: Complemental strand, 2836652 - 2836484
Alignment:
Q  136 cttctatatgttgaacttctctttgagttttcattggtttttctacgaagccttaggacaaattcttccttgctcaaacctct-------catctacatt 228  Q
    ||||| |||| |||||||||| || || |||||||||||| |||| |||  |||| || ||||||  | || |||||||||||       ||||||||||    
T  2836652 cttctgtatgatgaacttctccttcagatttcattggtttgtctatgaattcttacgagaaattccccattcctcaaacctctaaagtctcatctacatt 2836553  T
Q  229 ccaattaaattttaaacttaatgaattaattcacacaaaatttgatattcaaacagaaattgatcatagtcat 301  Q
    | ||||||||| ||| |||| |||||     |||||| || ||||||||||||| |||| || ||||||||||    
T  2836552 ctaattaaattataagcttattgaatc----cacacacaaattgatattcaaacggaaactggtcatagtcat 2836484  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 498 - 545
Target Start/End: Original strand, 21890939 - 21890986
Alignment:
Q  498 accttgcagcagcatgagcagtgtcaaatccacctatcaaaatcaaat 545  Q
    |||| |||||||||||||| ||||||||||||||||  ||||||||||    
T  21890939 acctagcagcagcatgagctgtgtcaaatccacctacaaaaatcaaat 21890986  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 401
Target Start/End: Original strand, 22616717 - 22616788
Alignment:
Q  330 taatcactcaaattaaagtttatatcagcatcaactcccctaaacataacagcagccctatcatatgctcta 401  Q
    |||||| ||||||| || ||||| |||||| |||||||||||||| ||| |||||| | |||||| ||||||    
T  22616717 taatcattcaaattgaaatttatgtcagcaccaactcccctaaacttaatagcagctcgatcataggctcta 22616788  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 498 - 545
Target Start/End: Complemental strand, 41049451 - 41049404
Alignment:
Q  498 accttgcagcagcatgagcagtgtcaaatccacctatcaaaatcaaat 545  Q
    |||| |||||||||||||| ||||||||||||||||  ||||||||||    
T  41049451 acctagcagcagcatgagctgtgtcaaatccacctacaaaaatcaaat 41049404  T

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