View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14475_high_4 (Length: 523)
Name: NF14475_high_4
Description: NF14475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14475_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 516
Target Start/End: Complemental strand, 33716019 - 33715517
Alignment:
| Q |
18 |
gatggtgcttaaataatcaatagaaagatttacctataaatgatccttacaaacatgcgatcttagtaactgtttggacaaaataattcacactgcgatg |
117 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33716019 |
gatggtgcttaaataatcaatagaaaaatttacctataaatgatccttacaaacatgcgatcttagtaactgtttggacaaaataattcacactgtgatg |
33715920 |
T |
|
| Q |
118 |
tcctcttaatttattaaactgataattagtannnnnnnnnggttaattgattttactgataatatatccagctgaaaatttagttttaaattaatttttc |
217 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33715919 |
tcctcttaatttattaaactgataattagtatttttttt-ggttaattgattttactgataatatatccagctgaaaatttagttttaaattaatttttc |
33715821 |
T |
|
| Q |
218 |
agctggttgtatatctcaaaaatcaatgtactgaataatcagagtatataannnnnnnnnn---ctattgaatataactcgcttttatttttatgttgaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33715820 |
agctggttgtatatctcaaaaatcaatgtactgaataatcagagtatataatttttttttttttctattgaatataactcgcttttatttttatgttgaa |
33715721 |
T |
|
| Q |
315 |
tagaattggttgtatggaaaatatcaagaacactttaattctaaaactctattaaatgtgaaagtgtaatacattagcagttgcttgtgtcgcaaggaaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
33715720 |
tagaattggttgtatggaaaatatcaagaacactttctttctaaaactctattaaatgtgaaaatgtaatacattagcagttgcttgtgtcacaaggaaa |
33715621 |
T |
|
| Q |
415 |
tgaatagttacgtaactaactactacctctaaatagtttcacaccaaataaagatcccttatcactgcaactatcgtagagctggg--tatatgagatcc |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
33715620 |
tgaatagttacgtaactaactactacctctaaatagtttcacaccaaataaagatcccttatcactgcaactatcgtagagcttggtatatatgagatcc |
33715521 |
T |
|
| Q |
513 |
tatg |
516 |
Q |
| |
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|||| |
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| T |
33715520 |
tatg |
33715517 |
T |
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