View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14475_high_5 (Length: 489)
Name: NF14475_high_5
Description: NF14475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14475_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Complemental strand, 40208078 - 40207676
Alignment:
| Q |
18 |
tttggaaagactatagacaacatgaactctctcaaaaatattatcagcgtctttgaagtcgttaaagtcatttctgtctttaagaatttccatgacgctg |
117 |
Q |
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| T |
40208078 |
tttggaaagactatagacaacatgaactctctcaaaaatattatcagcgtctttggagttgttaaagtcatttctgtctttaagaatttccatgacgctg |
40207979 |
T |
|
| Q |
118 |
atgaaatttggagaggaaaaaacagtgccggagtaaatctcgtcgcttatcaaatgcatgtctttgttttctttgataaagtcaacgagaagatttaatt |
217 |
Q |
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| T |
40207978 |
atgaaatttggagaggaaaaaacagtgccggagtaaatctcgtcgcttatcaaatgcatgtctttgttttctttgataaagtcaacgagaaggtttaatt |
40207879 |
T |
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| Q |
218 |
cactccttgacattgtggtgcctagcgggtttgatgggtttgtaaccattactcctttgactttaaggttgcgtttttgtgcctcttggtatgcttgttg |
317 |
Q |
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| T |
40207878 |
cactccttgacattgtggtgcctagcgggtttgatgggtttgtaaccattactcctttgactttaaggttgcgtttttgtgcctcttggtatgcttgttg |
40207779 |
T |
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| Q |
318 |
caatgcttgttcggttacttgaaagttgttggagcttgagcaatgtattggaacaatctcaacaccagttctccacttaagatctctatcaaatctgcac |
417 |
Q |
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| T |
40207778 |
caatgcttgttcggttacttgaaagttgttggagcttgtgcaatgtattggaacaatctcaacaccagttctccacttaagatctctatcaaatctgcac |
40207679 |
T |
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| Q |
418 |
aaa |
420 |
Q |
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||| |
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| T |
40207678 |
aaa |
40207676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 442 - 483
Target Start/End: Complemental strand, 40207657 - 40207616
Alignment:
| Q |
442 |
tatcaacaactttgtcgcgaataatgtcacatattcatctct |
483 |
Q |
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| T |
40207657 |
tatcaacaactttgtcgcgaataatgtcacatattcagctct |
40207616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 8e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 79 - 416
Target Start/End: Original strand, 5134526 - 5134863
Alignment:
| Q |
79 |
ttaaagtcatttctgtctttaagaatttccatgacgctgatgaaatttggagaggaaaaaacagtgccggagtaaatctcgtcgcttatcaaatgcatgt |
178 |
Q |
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||||| |||||||| || ||||| |||||||||||||| ||||| | ||||||| |||||| || || |||||||| ||||||||||| |||||||||| |
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| T |
5134526 |
ttaaaatcatttctttccttaaggatttccatgacgctaatgaagctcggagaggtaaaaactgtccctgagtaaatttcgtcgcttattaaatgcatgt |
5134625 |
T |
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| Q |
179 |
ctttgttttctttgataaagtcaacgagaagatttaattcactccttgacattgtggtgcctagcgggtttgatgggtttgtaaccattactcctttgac |
278 |
Q |
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| T |
5134626 |
ctttgttgtctttgatgaagtcaatgagaaggtttaattcactctttgacattgtagtgcctagtgggtttgatggatttgtgactaagacacctttgac |
5134725 |
T |
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| Q |
279 |
tttaaggttgcgtttttgtgcctcttggtatgcttgttgcaatgcttgttcggttacttgaaagttgttggagcttgagcaatgtattggaacaatctca |
378 |
Q |
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| T |
5134726 |
tttaaggttcttgttctttgcttcttcataagcttgttgcaaagccgattctgtgatttggaagttatttgtgcttgtgcattgtattggcactatctcg |
5134825 |
T |
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| Q |
379 |
acaccagttctccacttaagatctctatcaaatctgca |
416 |
Q |
| |
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|| ||||||||||| || | ||||||||||||||||| |
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| T |
5134826 |
accccagttctccattttaagtctctatcaaatctgca |
5134863 |
T |
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