View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14475_high_6 (Length: 487)
Name: NF14475_high_6
Description: NF14475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14475_high_6 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 265 - 487
Target Start/End: Complemental strand, 39847679 - 39847457
Alignment:
| Q |
265 |
attcaaatattcttctgattttgtggtcaagttcacatttatgcaactccaaactgaggtgaattttccaagacactctgaaagacatgcttcaccttgc |
364 |
Q |
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| T |
39847679 |
attcaaatattcttctgattttgtggtcaagttcacatttattcaactccaaactgaggtgaattttccaagacactctgaaagacatgcttcaccttgc |
39847580 |
T |
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| Q |
365 |
aaccattagcactgatgcaaacggagaatcaagcacacacagtgggttgagattttaatggaaaaattctgttactatcaatacaatacgtgatgctcag |
464 |
Q |
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| T |
39847579 |
aaccattagcactgatgcaaacggagaatcaaacacaccaagtgggttgagattttaatggaaaaattctgttactatcaataaaatacgtgatgctcag |
39847480 |
T |
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| Q |
465 |
ctgagacaacattattctgttgt |
487 |
Q |
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| T |
39847479 |
ctgagacaacattattctgttgt |
39847457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 14 - 165
Target Start/End: Complemental strand, 39849568 - 39849417
Alignment:
| Q |
14 |
aaaatcattattaaaagaatttaagttagtctcacaagtacaattcaattgataaatgcaaaaaatgttgatatgaaaggatttaggtccgaactcgaga |
113 |
Q |
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| T |
39849568 |
aaaatcattattaaaagaatttaatttagtctcacaagtacaattcagttgatagatgcaaaaaatgttgatatgaaaggatttacgttcgaactcgaga |
39849469 |
T |
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| Q |
114 |
ttcatcacttcttcacatttaagatgtacgaatcttaattcttgccatagat |
165 |
Q |
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| T |
39849468 |
ttcatcacttcttcacatttaaggtgtgcaaatcttaattcttgacatagat |
39849417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 39849036 - 39848981
Alignment:
| Q |
193 |
attaaactttgcataacatatccggaaagtatcaacatctaatatgttcaataaag |
248 |
Q |
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| T |
39849036 |
attaaactttgcataacatttccggaaagtatcaacgtctaatatgttcaataaag |
39848981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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