View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14475_high_7 (Length: 471)
Name: NF14475_high_7
Description: NF14475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14475_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 11 - 452
Target Start/End: Complemental strand, 26593729 - 26593288
Alignment:
| Q |
11 |
cacagaacatcagaggcattaaaagtgacaccccattagccatggatgtcttacaattaacattaccaacgtcaagcgggacattccaatccaacaaaag |
110 |
Q |
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| T |
26593729 |
cacagaacatcagaggcatcaaaagtgacaccccattagccatggatgtcttacaattaacattaccaacgtcaagcgggacattccaatccaacaaaag |
26593630 |
T |
|
| Q |
111 |
agacggtgtgatagcaccaatgctcaaattctttgacatgaccaactcatttttctctattgatgcatacccatatttcccatggtcacaggaccctcaa |
210 |
Q |
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| T |
26593629 |
agacggtgtgatagcaccaatgctcaaattctttgacatgaccaactcatttttctctattgatgcatacccatatttcccatggtcacaggaccctcaa |
26593530 |
T |
|
| Q |
211 |
cagtattcccctagactttactctgtttaggggagactttaccacaagagaccttggtaggcttaatctacataaacttgttagacgaaatgcttgattc |
310 |
Q |
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||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26593529 |
cagtattcccctagattttactctatttaggagagactttaccacaagagaccttggtaggcttaatctacataaacttgttagacgaaatgcttgattc |
26593430 |
T |
|
| Q |
311 |
cctcatctttgccatgtcaaaactcggatactccaagacataaaagaacctgacttgaacgtttacaacgcggccacaaacaatctcaatctcatccaaa |
410 |
Q |
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| T |
26593429 |
cctcatctttgccatgtcaaaactcggatactccaagacataaaagaacctgacgtgaacgtttacaacgcagccacaaacaatcccaatctcatccaaa |
26593330 |
T |
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| Q |
411 |
gaatgacaacaaaaccaccaatcgaaacaccaatgtgccctg |
452 |
Q |
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| T |
26593329 |
gaatgacaacaaaaccaccaatcgaaacaccaatgtgccctg |
26593288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 13 - 343
Target Start/End: Complemental strand, 34750383 - 34750052
Alignment:
| Q |
13 |
cagaacatcagaggcattaaaagtgacaccccattagccatggatgtcttacaattaacattaccaacgtcaagcgggacattccaatccaacaaaagag |
112 |
Q |
| |
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||||| || |||||||| |||| || ||||||||||||||||||||||||| ||| ||| || ||| ||||||| || ||||||| |||| ||| ||||| |
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| T |
34750383 |
cagaatataagaggcatcaaaattggcaccccattagccatggatgtcttagaatcaaccttcccaccgtcaagtggaacattccgatccgacataagag |
34750284 |
T |
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| Q |
113 |
acggtgtgatagcaccaatgctcaaattctttgacatgaccaactcatttttctctattgatgcatacccatatttcccatggtcacaggaccctcaaca |
212 |
Q |
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|| ||||||| |||||||||||||||||||| ||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34750283 |
acagtgtgatggcaccaatgctcaaattcttaaacagaaccaattcatttttcttcattgatgcatacccatatttcccatggtcacaggaccc-caaca |
34750185 |
T |
|
| Q |
213 |
gtattcccctagactttactctgtttaggggagactttaccacaagagaccttggta--ggcttaatctacataaacttgttagacgaaatgcttgattc |
310 |
Q |
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|||||||||||||| | |||| || || ||||| || ||||||||||||| || || ||||||||||||| ||||||||||||| |||||||||| || |
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| T |
34750184 |
atattcccctagactatgctctcttcagaggagatttcaccacaagagaccctgatagtggcttaatctacagaaacttgttagaccaaatgcttgactc |
34750085 |
T |
|
| Q |
311 |
cctcatctttgccatgtcaaaactcggatactc |
343 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |
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| T |
34750084 |
cctcctctttgccatgtcaaaactcggatactc |
34750052 |
T |
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