View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14475_high_8 (Length: 433)
Name: NF14475_high_8
Description: NF14475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14475_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 69 - 420
Target Start/End: Original strand, 39847125 - 39847469
Alignment:
| Q |
69 |
ccaaaataccagcttactatggctgatgtaaatcaaagttctatcgaacttggataatagagnnnnnnnncttctctattcttgttaatgcagctttaaa |
168 |
Q |
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| T |
39847125 |
ccaaaataccagcttactatggctgatgtaaatcaaagttctatcgaacttggacaatagagaaaaaaaacttctctattcttgttaatgcagctttaaa |
39847224 |
T |
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| Q |
169 |
ctttctgagaaatattttgtcattttcgcatcggttatgacttatgagtgaatgaaaggttagtaattcgcagttcggctaaagggtaagtaaaatttca |
268 |
Q |
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| T |
39847225 |
ctttctgagaaatattttgtcattttcgcatcggttat-------gagtgaatgaaaggttagtaattcgcagttcggctaaagggtaagtaaaatttcg |
39847317 |
T |
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| Q |
269 |
ttaaagattattccgactaaaataatgcttgcaagaaaacatgcttcaagttcactctttatcttatgctgtgacataattccccaaaactctaatggga |
368 |
Q |
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| T |
39847318 |
ttaaagattattccgactaaaataatgcttgcaagaaaacatgcttcaagttcactctttatcttatgctgtgacataattccccaaaactctaatggga |
39847417 |
T |
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| Q |
369 |
tgctaaatattcaattaaattgattagaagcatatttttacaacagaataat |
420 |
Q |
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| T |
39847418 |
tgctaaatattcaattaaattgattagaagcatatttttacaacagaataat |
39847469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 39847068 - 39847096
Alignment:
| Q |
18 |
gaaactaagtgtatgtaaacatagtcttg |
46 |
Q |
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| T |
39847068 |
gaaactaagtgtatgtaaacatagtcttg |
39847096 |
T |
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