View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14475_high_9 (Length: 431)
Name: NF14475_high_9
Description: NF14475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14475_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 4 - 418
Target Start/End: Original strand, 46487532 - 46487946
Alignment:
| Q |
4 |
taggaggactagaggcaagataaccaagttgctcagccaatacatcaacatcttcaatatccacttcatcttcaataccctctttaaacaaatcttgcca |
103 |
Q |
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| T |
46487532 |
taggaggactagaggcaagataaccaagttgctcagccaatacatcaacatcttcaatatccacttcatcttcaataccctctttaaacaaatcttgcca |
46487631 |
T |
|
| Q |
104 |
aaacacttcaatatcgatctccttatctcttacttcaagttgattgatgtgattggaatcttcctcaacatcttgatgtgtttcgagtttgacaaaattt |
203 |
Q |
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| T |
46487632 |
aaacacttcaatatcgatctctttatctcttacttcaagttgattgatttgattggaatcttcctcaacatcttgatgtgtttcgagtttgacaaaattt |
46487731 |
T |
|
| Q |
204 |
aagcactctttatcaacatatcctaattcatcacctgcttcaacattactaggcccttgatcaatagttctccttctcttcttagaaaaaatttcctcta |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46487732 |
aagcactctttatcaacatatcctaattcatcacctgcttcaacattactaggcccttgatcaatagttctccttctcttcttagaaaaaatttcctcta |
46487831 |
T |
|
| Q |
304 |
actcttttctccattccttctgctgaactaactgttgcaagaaataaggattttgtattgcccttgccaagaaattcatcatctgtttttgtttttgttc |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46487832 |
actcttttctccattccttctgctgaactaactgttgcaagaaattaggattttgtattgcccttgccaagaaattcatcatctgtttttgtttttgttc |
46487931 |
T |
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| Q |
404 |
acttcttttaagcct |
418 |
Q |
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||||||||||||||| |
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| T |
46487932 |
acttcttttaagcct |
46487946 |
T |
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