View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14475_low_13 (Length: 392)
Name: NF14475_low_13
Description: NF14475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14475_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 29 - 375
Target Start/End: Complemental strand, 38144649 - 38144306
Alignment:
| Q |
29 |
atcatcaacttgataaggcaattgcattagtcaatgaaattcataaccaaggcattcaggtggatttgtacacatgtagtatgcttattgatggtttgtc |
128 |
Q |
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| T |
38144649 |
atcatcaacttgataaggcaattgcattagtcaaggaaattcataaccaaggcattcaggtggatttgtacacatgtagtatgcttattgatggtttgtc |
38144550 |
T |
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| Q |
129 |
caaagggggaagacttaaggatgcatgcacaacaaatttttaaggatcttttgattagaggatacaatgtagatgttgttacttataaaaatatgatgag |
228 |
Q |
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| T |
38144549 |
taaagggggaagacttaaggatgca----caacaaatttttaaggatcttttgattaaaggatacaatgtagatgttgttacttataaatatatgatcag |
38144454 |
T |
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| Q |
229 |
ttgtctttgttaagaaggtttggttgtaaaagcatctgctttgctataaaaaattaaagctaagggttgctttccaaatgctat-aactgttgagatgtt |
327 |
Q |
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| T |
38144453 |
tggtctttgttaagaaggtttggttgtaaaagcatctgctttgctataaaaaattaaagctaagggttgctttccaaatgctataaactgttgagatgtt |
38144354 |
T |
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| Q |
328 |
catttttgcactctttgaaagcagggagaatgataaagcagataaaat |
375 |
Q |
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| T |
38144353 |
catttgtgcactctttgaaagcagggagaatgataaagcagataaaat |
38144306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 153
Target Start/End: Original strand, 41316333 - 41316454
Alignment:
| Q |
32 |
atcaacttgataaggcaattgcattagtcaatgaaattcataaccaaggcattcaggtggatttgtacacatgtagtatgcttattgatggtttgtccaa |
131 |
Q |
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| T |
41316333 |
atcatcttgacaaggctattgcattagtgaagaaaattaaagaccaaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaa |
41316432 |
T |
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| Q |
132 |
agggggaagacttaaggatgca |
153 |
Q |
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| T |
41316433 |
atgaggaagacttaagaatgca |
41316454 |
T |
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