View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14475_low_14 (Length: 378)
Name: NF14475_low_14
Description: NF14475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14475_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 370
Target Start/End: Complemental strand, 39296255 - 39295904
Alignment:
| Q |
19 |
gtttttgatcgtgagaacaagagaataaactagccatgctattgaagaaacaccgcagccactatgaattcctccaatacattgaaggaatgaagttatt |
118 |
Q |
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| T |
39296255 |
gtttgtgatcgtgagaacgagagaatatactagccatgctattgaagaaacaccgcagccactatgaattcctccaatacattgaaggaatgaagttatt |
39296156 |
T |
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| Q |
119 |
gctgttttgattctaagagaaacacaaggattccctatagttttgacaacaaaccagtaaagaagtcttaaaaccacctcgcttcgacatagtgttaaag |
218 |
Q |
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| T |
39296155 |
gctgttttgattctaagagaaacacaaggtttccctatagttttgacaacaaaccagtaaagaagtcttaaaaccacctcgcttcgacatagtgttaaag |
39296056 |
T |
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| Q |
219 |
ctagaatgttaccaatggagaaaagtgtagctcttgatttaccatatggaaaatgccctaaaactgaaagagcaagtgctaacatattcaaggttatgca |
318 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39296055 |
ctaggatgttaccaatggagaaaagtgtagctcttgatttaccatatggaaaatgccctaaaactgaaagagcaagtgctaacatattcaaggttatgca |
39295956 |
T |
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| Q |
319 |
aaccaagaacagtcctttgtacactgtgcaaccttgatccagcagaataatc |
370 |
Q |
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| T |
39295955 |
aaccaagaacagtcctttgtacactgtgcaaccttgatccagcagaataatc |
39295904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 21 - 369
Target Start/End: Complemental strand, 39289370 - 39289022
Alignment:
| Q |
21 |
ttttgatcgtgagaacaagagaataaactagccatgctattgaagaaacaccgcagccactatgaattcctccaatacattgaaggaatgaagttattgc |
120 |
Q |
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||||||||||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39289370 |
ttttgatcgtgagtacgagagaataaactagccatgctatcgaagaaacgccgcagccactatgaattcctccaatacattgaagaaatgaagttattgc |
39289271 |
T |
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| Q |
121 |
tgttttgattctaagagaaacacaaggattccctatagttttgacaacaaaccagtaaagaagtcttaaaaccacctcgcttcgacatagtgttaaagct |
220 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
39289270 |
tgttttgattctaagagaaacacaaggcttccctatagttttgacaacaaaccagtaaagaagtcttaaaaccgcctcacttcgacatagtgttaaagct |
39289171 |
T |
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| Q |
221 |
agaatgttaccaatggagaaaagtgtagctcttgatttaccatatggaaaatgccctaaaactgaaagagcaagtgctaacatattcaaggttatgcaaa |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39289170 |
agaatgttaccaatggagaaaagtgtagctcttgatttaccatatggaaaatgccctaaagctgaaagagcaagtgctaacatattcaaggttatgcaaa |
39289071 |
T |
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| Q |
321 |
ccaagaacagtcctttgtacactgtgcaaccttgatccagcagaataat |
369 |
Q |
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||||||| ||||||||||| |||||| |||||||||| ||||||||||| |
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| T |
39289070 |
ccaagaatagtcctttgtaaactgtgaaaccttgatctagcagaataat |
39289022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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