View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14475_low_17 (Length: 355)
Name: NF14475_low_17
Description: NF14475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14475_low_17 |
 | |
|
| [»] scaffold0008 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 2834447 - 2834120
Alignment:
| Q |
18 |
gaatccagccaaatttcgcagtctagtattgatctttgactcatagtatgtgagtattactattgttccaattgcaactggttgataaaccaatgtaagt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2834447 |
gaatccagccaaatttcgcagtctagtattgatctttgactcatagtatgtgagtattactattgttccaattgcaactggttgataaaccaatgtaagt |
2834348 |
T |
|
| Q |
118 |
acccttgaaggatgatatttcttcagagtgaaacaaagcatataatcaataattcatctcatatttcatgaagtctcaaataatttaatcagaaacagaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2834347 |
acccttgaaggatgatatttcttcagagtgaaacaaagcatataatcaataattcatctcatatttcatgaagtctcaaataatttaatcagaaacagaa |
2834248 |
T |
|
| Q |
218 |
actttccagttgacattctttgtaagacgagcatttaactattgttcttaagaaaaatttggtacaaccatgttaagccgagacgctagttacttaccgg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2834247 |
actttccagttgacattctttgtaagacgagcatttaactattgttcttaagaaaaatttggtacaaccatgttaagctgagacgctagttacttaccgg |
2834148 |
T |
|
| Q |
318 |
gaacaatttgtaatagtaatctcctatg |
345 |
Q |
| |
|
|||||| ||||||||||||||||||||| |
|
|
| T |
2834147 |
gaacaaattgtaatagtaatctcctatg |
2834120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 139
Target Start/End: Original strand, 64321 - 64417
Alignment:
| Q |
43 |
gtattgatctttgactcatagtatgtgagtattactattgttccaattgcaactggttgataaaccaatgtaagtacccttgaaggatgatatttct |
139 |
Q |
| |
|
|||||||| |||| ||||||||| || || ||| ||| |||||||| ||||| ||| ||||| || | ||||| ||||| || ||||||||||||| |
|
|
| T |
64321 |
gtattgatttttgcctcatagtaagtaagaattgctagtgttccaactgcaaatggctgatatacaagagtaagcaccctagagggatgatatttct |
64417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University