View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14475_low_2 (Length: 623)
Name: NF14475_low_2
Description: NF14475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14475_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 130 - 605
Target Start/End: Original strand, 43870406 - 43870880
Alignment:
| Q |
130 |
cttaaaaaattgtgtaatttttactttagatatgtttgacagtatttacaaaacaaaagtttgtttccgtggagnnnnnnnagagcacttgtaaccatga |
229 |
Q |
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| T |
43870406 |
cttaaaaaattgtgtaatttttactttagatatatttgacagtatttacaaaacaaaagtttgtttccgtggagtttttttagagcacttgtaaccatga |
43870505 |
T |
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| Q |
230 |
ttcgtattttatgaatgttggtgtaaatatccagaaaaatcattagattttttgttgttgttg---gtgaatataactattgaatatattttattttatt |
326 |
Q |
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| T |
43870506 |
ttcgtattttatgaatgttggtgtaaatatccagaaaaatcattagattttttgttgttgttgttggtgaatataaatattgaatatattttattttatt |
43870605 |
T |
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| Q |
327 |
taaatgaaaatatgaannnnnnnctttaataagaatgtaaatgaattcctgcattacatgtaatgtacgataaggttccctccttatctggttactgtct |
426 |
Q |
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| T |
43870606 |
taaatgtaaatatgagtttttttctttaataagaatgtaaatgaatttctaaa---catgtaatgtacgataaggttccctccttatctggttactgtct |
43870702 |
T |
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| Q |
427 |
tggtgaccaaagacaatggcgacgcaatcttatcttgttaatctcaactccttccatgcgggaatcacaggtaactattcaactttcttgtactcttttt |
526 |
Q |
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| T |
43870703 |
tggtgaccaaagacaatggcgacgcaatcttatcttgttaatctcaactccttccatgcgggaatcacaggtaactattcaactttcttgtactctcttt |
43870802 |
T |
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| Q |
527 |
cttatcaagcaaaccaccttcatttcacttcactcctttccattttttcaatcttgtaggacggaatccttcaatattc |
605 |
Q |
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| T |
43870803 |
cttatcaagcaaaccaccttcatttcacttcact-ctttccattttttcaatcttgtaggacggtatccttcaatattc |
43870880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 9301018 - 9301082
Alignment:
| Q |
92 |
ttaggcattgtttaaacaattaatagtgatagcttttacttaaaaaattgtgtaatttttacttt |
156 |
Q |
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| T |
9301018 |
ttaggtattgtttaagcaattaaaagtgataacttttatataaaaaattgtgtaattattacttt |
9301082 |
T |
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