View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14475_low_21 (Length: 335)
Name: NF14475_low_21
Description: NF14475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14475_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 24120879 - 24121206
Alignment:
| Q |
1 |
tacaccaatactaatgaaaatttcctccacgtcattaagagggaccttcattctttttagatatgaaacagcgtcaatggatgacattggagtcacaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24120879 |
tacaccaatactaatgaaaatttcctccacgtcattaagagggaccttcattctttctagatatgaaacagcgtcaatggatgacattggagtcacaacc |
24120978 |
T |
|
| Q |
101 |
aagtcgtctgtcaccataattgttaatggtcctttgatatatcctccagaaagagaggatttaggatcaacaagtttcgcgggttcaccactatcaaacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24120979 |
aagtcgtctgtcaccataattgttaatggtcctttgatatatcctccagaaagagaggatttaggatcaacaagtttcgcgggttcaccactatcaaacg |
24121078 |
T |
|
| Q |
201 |
tgcaagttaacggacacgttccaattggtagtatttgcttcttgagttcaaaattggcaaaaatacgaggcttagttagtttgtttttgagttcctgtga |
300 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24121079 |
tgcaagttaacggacacgttccaattggtagtatctggttcttgagttcaaaattggcaaaaatacgaggcttagttagtttgtttttgagttcctgtga |
24121178 |
T |
|
| Q |
301 |
cgttaaacatctctctccattcatctca |
328 |
Q |
| |
|
|||||||||||||||| |||||| |||| |
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| T |
24121179 |
cgttaaacatctctctgcattcaactca |
24121206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 2 - 127
Target Start/End: Original strand, 24131346 - 24131471
Alignment:
| Q |
2 |
acaccaatactaatgaaaatttcctccacgtcattaagagggaccttcattctttttagatatgaaacagcgtcaatggatgacattggagtcacaacca |
101 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
24131346 |
acaccaatactaacaacaatttcctccacgtcattaagagggaccttcattctttctagatacgaaacagcatcaatggatgacattggagtcacaacca |
24131445 |
T |
|
| Q |
102 |
agtcgtctgtcaccataattgttaat |
127 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
24131446 |
agtcgtctgtcaccataattgttaat |
24131471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 24137272 - 24137425
Alignment:
| Q |
20 |
atttcctccacgtcattaagagggaccttcattctttttagatatgaaacagcgtcaatggatgacattggagtcacaaccaagtcgtctgtcaccataa |
119 |
Q |
| |
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||||||||||||||| |||| || ||||||||||||| |||||||||| | | ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24137272 |
atttcctccacgtcactaaggggaaccttcattctttcaagatatgaaataccatcaatggatgacattggagtcacaaccaattcgtctgtcaccataa |
24137371 |
T |
|
| Q |
120 |
ttgttaatggtcctttgatatatcctccagaaagagaggatttaggatcaacaa |
173 |
Q |
| |
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| T |
24137372 |
acgttaatggtgctctagcatatcctccagaaataggggatttaggatcaacaa |
24137425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 2 - 169
Target Start/End: Original strand, 24153143 - 24153310
Alignment:
| Q |
2 |
acaccaatactaatgaaaatttcctccacgtcattaagagggaccttcattctttttagatatgaaacagcgtcaatggatgacattggagtcacaacca |
101 |
Q |
| |
|
||||||||||| |||| ||||||| || |||| ||| || ||||||| | ||| ||||||||||||||| ||||| ||||| |||||||||||||||| |
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| T |
24153143 |
acaccaatacttatgaccatttccttcaaatcatcaaggggtaccttcaatttttctagatatgaaacagcatcaatagatgaaattggagtcacaacca |
24153242 |
T |
|
| Q |
102 |
agtcgtctgtcaccataattgttaatggtcctttgatatatcctccagaaagagaggatttaggatca |
169 |
Q |
| |
|
||||||||||||||| ||| ||||| |||||| ||| ||||||||||||||||| || ||| |||||| |
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| T |
24153243 |
agtcgtctgtcaccaaaatcgttaaaggtcctctgacatatcctccagaaagagtgggttttggatca |
24153310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 2 - 173
Target Start/End: Original strand, 24158403 - 24158574
Alignment:
| Q |
2 |
acaccaatactaatgaaaatttcctccacgtcattaagagggaccttcattctttttagatatgaaacagcgtcaatggatgacattggagtcacaacca |
101 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| ||| | ||| |||||||||| ||||||||||||| | || || ||||| ||||||||| |||||| |
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| T |
24158403 |
acaccaatactaatgacaatttcctccaaatcaacaagggagacattcattctttctagatatgaaacaccatcgatagatgaaattggagtcgcaacca |
24158502 |
T |
|
| Q |
102 |
agtcgtctgtcaccataattgttaatggtcctttgatatatcctccagaaagagaggatttaggatcaacaa |
173 |
Q |
| |
|
||||||||||||||||| ||||||| |||||| | | |||||||||||||| || | |||| |||||||||| |
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| T |
24158503 |
agtcgtctgtcaccatagttgttaacggtcctctaacatatcctccagaaacagggaatttgggatcaacaa |
24158574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 24145008 - 24145158
Alignment:
| Q |
20 |
atttcctccacgtcattaagagggaccttcattctttttagatatgaaacagcgtcaatggatgacattggagtcacaaccaagtcgtctgtcaccataa |
119 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||| |||||||||| | | ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24145008 |
atttcctccacgtcattaagtgagaccttcattctttcaagatatgaaataccatcaatggatgacattggagtcacaaccaattcgtctgtcaccataa |
24145107 |
T |
|
| Q |
120 |
ttgttaatggtcctttgatatatcctccagaaagagaggatttaggatcaa |
170 |
Q |
| |
|
||||||| | || |||||| ||||||| || |||||||||||||| |
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|
| T |
24145108 |
acgttaatgatgctccagcatatccaccagaaataggggatttaggatcaa |
24145158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 24125705 - 24125855
Alignment:
| Q |
20 |
atttcctccacgtcattaagagggaccttcattctttttagatatgaaacagcgtcaatggatgacattggagtcacaaccaagtcgtctgtcaccataa |
119 |
Q |
| |
|
||||||||||||||| |||| || ||||||||||||| |||||||||| | | ||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
24125705 |
atttcctccacgtcactaaggggaaccttcattctttcaagatatgaaataccatcaatggatgacattggagtcacaatcaagtcatctgtcaccataa |
24125804 |
T |
|
| Q |
120 |
ttgttaatggtcctttgatatatcctccagaaagagaggatttaggatcaa |
170 |
Q |
| |
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||||||| | || |||||| ||||||| || |||||||||||||| |
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| T |
24125805 |
acgttaatgatgctccagcatatccaccagaaataggggatttaggatcaa |
24125855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 24149991 - 24150103
Alignment:
| Q |
21 |
tttcctccacgtcattaagagggaccttcattctttttagatatgaaacagcgtcaatggatgacattggagtcacaaccaagtcgtctgtcaccataat |
120 |
Q |
| |
|
|||| ||||| |||||||| |||||||||||||||| || |||||||||| | || || |||||||||||||||||||||||||| |||||||| | |
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| T |
24149991 |
tttcttccacatcattaagggggaccttcattctttctaaatatgaaacaccagatattgacgacattggagtcacaaccaagtcgtcggtcaccatgaa |
24150090 |
T |
|
| Q |
121 |
tgttaatggtcct |
133 |
Q |
| |
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||||||||||||| |
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| T |
24150091 |
tgttaatggtcct |
24150103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 15381480 - 15381331
Alignment:
| Q |
21 |
tttcctccacgtcattaagagggaccttcattctttttagatatgaaacagcgtcaatggatgacattggagtcacaaccaagtcgtctgtcaccataat |
120 |
Q |
| |
|
|||||||||| ||||||| | ||||||||||||| |||||| |||||| | |||||||||| | || ||||| |||| |||||||||||| || | |
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|
| T |
15381480 |
tttcctccacatcattaaaggcaaccttcattctttctagataggaaacaacagcaatggatgataacggggtcactaccatgtcgtctgtcacgatgaa |
15381381 |
T |
|
| Q |
121 |
tgttaatggtcctttgatatatcctccagaaagagaggatttaggatcaa |
170 |
Q |
| |
|
|| | |||||||||| |||||||||||||| || |||||||||||||| |
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|
| T |
15381380 |
ggtaatcggtcctttgacatatcctccagaaataggggatttaggatcaa |
15381331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 117
Target Start/End: Complemental strand, 10990081 - 10990047
Alignment:
| Q |
83 |
gacattggagtcacaaccaagtcgtctgtcaccat |
117 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| |
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|
| T |
10990081 |
gacattggagtcacaaccaagtcatctgtcaccat |
10990047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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