View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14475_low_22 (Length: 333)
Name: NF14475_low_22
Description: NF14475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14475_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 3877557 - 3877808
Alignment:
| Q |
13 |
aatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaattaatgaatgagtttaatggaaatatggtttatgat |
112 |
Q |
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| T |
3877557 |
aatataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtgcttgaaattaatga----gttgaaccgaaatatggtttatgat |
3877652 |
T |
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| Q |
113 |
taaacatggtaacataagccgaccccatttaatacgaaaatgtttgattcggtaactagtccatgaacggacaaatcggggttcaatctcatcaatcatt |
212 |
Q |
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| T |
3877653 |
taaacatggtaacataagccgaccccatttaatacgaaaatgtttgattcggtatctagtccatgaaccgacatatcggggttcaatctcatcgatcatt |
3877752 |
T |
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| Q |
213 |
tgccggacccatttaaagttaaaagaagaacatgagaagagggagtataattttgc |
268 |
Q |
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| T |
3877753 |
tgccggacccatttaaagttaaaagaagaacatgagaagagggagtataattttgc |
3877808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 3877892 - 3877944
Alignment:
| Q |
266 |
tgcatgcaaaggttcgtacatgggttgatgtgagtttttgacctcgacatagg |
318 |
Q |
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| T |
3877892 |
tgcatgcaaaggttcgtacatgggttgatgtgagtttttgacctcgacatagg |
3877944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 51234327 - 51234386
Alignment:
| Q |
18 |
aaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat |
77 |
Q |
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| T |
51234327 |
aaaatgatggagaaattgaagcagatgtaaatcatcaaattcaagttgggtggttgaaat |
51234386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 25191092 - 25191151
Alignment:
| Q |
18 |
aaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat |
77 |
Q |
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| T |
25191092 |
aaaatgatggagaaatagaagcaaatgtaaatcatcgtattcaagctgggtggttgaaat |
25191151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 1629141 - 1629203
Alignment:
| Q |
15 |
tataaaacgatggagaaatagaagcaaatataattcatcaaattcaatatgggtggttgaaat |
77 |
Q |
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| T |
1629141 |
tataaaacgatggagaaatagaagcagatgtaaatcatcgtattcaacttgagtggttgaaat |
1629203 |
T |
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