View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14475_low_23 (Length: 317)
Name: NF14475_low_23
Description: NF14475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14475_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 122 - 299
Target Start/End: Complemental strand, 9078243 - 9078066
Alignment:
| Q |
122 |
agccagagaatcttcttttagacacaaatggtgttcttaaagtttcagattttggattaagtaaatactcacagcaggtatgattatattaatcccaaat |
221 |
Q |
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| T |
9078243 |
agccagagaatcttcttttagatacaaatggtgttcttaaagtttcagattttggattaagtacatactcacagcaggtatgattatattaatcccaaat |
9078144 |
T |
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| Q |
222 |
aattatttgattcaattattccaaataatttggttttggattatactttaacctagtagatgattgttgcatttgaat |
299 |
Q |
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| T |
9078143 |
aattatttgattcaattattccaaataatttggttttggattatactttaacctagtagatgagtgttacatttgaat |
9078066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 122 - 296
Target Start/End: Complemental strand, 9087020 - 9086846
Alignment:
| Q |
122 |
agccagagaatcttcttttagacacaaatggtgttcttaaagtttcagattttggattaagtaaatactcacagcaggtatgattatattaatcccaaat |
221 |
Q |
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| T |
9087020 |
agccagagaatcttcttttagatacaaatggtgttcttaaagtttcagattttggattaagtacatactcacagcaggtatgataatattaatcccaaat |
9086921 |
T |
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| Q |
222 |
aattatttgattcaattattccaaataatttggttttggattatactttaacctagtagatgattgttgcatttg |
296 |
Q |
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| T |
9086920 |
aattatttgattccattattccaaataatttggttttcgattatactttaaccgagtagatgagtgttacatttg |
9086846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 9078393 - 9078292
Alignment:
| Q |
11 |
cacagagatttgaaggtctaacaactttcttaatcctcttatttcctctgtaatttaattaataattagttagttttgaacatgaataaactatttttac |
110 |
Q |
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| T |
9078393 |
cacagagatttgaaggtctaacaacttccttaatcctcttatttcctctctaatttaattaataatttgttagttttgaacatgaataaactatttttac |
9078294 |
T |
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| Q |
111 |
tc |
112 |
Q |
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|| |
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| T |
9078293 |
tc |
9078292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 9087170 - 9087069
Alignment:
| Q |
11 |
cacagagatttgaaggtctaacaactttcttaatcctcttatttcctctgtaatttaattaataattagttagttttgaacatgaataaactatttttac |
110 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9087170 |
cacagagatttgaaggtctaacaacttccttaatcctcttatttcctctctaatttaattaataatttgttagttttgaacatgaataaactatttttac |
9087071 |
T |
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| Q |
111 |
tc |
112 |
Q |
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|| |
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| T |
9087070 |
tc |
9087069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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