View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14475_low_24 (Length: 304)

Name: NF14475_low_24
Description: NF14475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14475_low_24
NF14475_low_24
[»] chr1 (3 HSPs)
chr1 (10-286)||(43866113-43866390)
chr1 (38-117)||(50204522-50204602)
chr1 (13-117)||(33966641-33966746)
[»] chr8 (3 HSPs)
chr8 (13-117)||(1468978-1469075)
chr8 (13-117)||(36881519-36881624)
chr8 (173-237)||(40258811-40258876)
[»] chr7 (4 HSPs)
chr7 (15-117)||(32368113-32368216)
chr7 (15-117)||(19781073-19781175)
chr7 (87-123)||(23636686-23636722)
chr7 (38-108)||(46082489-46082560)
[»] chr6 (3 HSPs)
chr6 (41-115)||(25101051-25101126)
chr6 (13-115)||(6539482-6539585)
chr6 (77-117)||(23890006-23890047)
[»] chr5 (4 HSPs)
chr5 (38-117)||(41377831-41377911)
chr5 (38-116)||(15402496-15402575)
chr5 (13-118)||(43281120-43281226)
chr5 (38-116)||(15400886-15400965)
[»] scaffold0768 (1 HSPs)
scaffold0768 (15-117)||(4269-4372)
[»] chr3 (1 HSPs)
chr3 (38-115)||(7227137-7227215)
[»] chr4 (1 HSPs)
chr4 (73-117)||(55911184-55911229)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 286
Target Start/End: Complemental strand, 43866390 - 43866113
Alignment:
Q  10 agtgaaaacagaggaaaagcgaccttgcgtaaagtcgaagcacggttgaggtgttgtgggccataggatcgtacgatc-tacgaaccagcactcgatcct 108  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  43866390 agtgaaaacagaggaaaagcgaccttgcctaaagtcgaagcacagttgaggtgttgtgggccataggatcgtaagatcctacgaaccagcactcgatcct 43866291  T
Q  109 gactacaatagtagtaagtactcaaattggttcctggatttgtaggactatgtcaaactagtattctagttggtcacattatcgatattctaaatgatct 208  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43866290 gactacaatggtagtaagtactcaaattggttcctggatttgtaggactatgtcaaactagtattctagttggtcacattatcgatattctaaatgatct 43866191  T
Q  209 ttgaaatgacaaaacttcaatcaaatttgccgctccgttgggactaaaatgacattaagttgttcagtaagtacaact 286  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43866190 ttgaaatcacaaaacttcaatcaaatttgccgctccgttgggactaaaatgacattaagttgttcagtaagtacaact 43866113  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 50204602 - 50204522
Alignment:
Q  38 gtaaagtcgaagcacggttgaggtgttgtgggccataggatcgtacgatc-tacgaaccagcactcgatcctgactacaat 117  Q
    |||||||||||||||| |||||||| |||||  | ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  50204602 gtaaagtcgaagcacgattgaggtgctgtggaacgtaggatcatacgatcctacgaaccagcactcgatcctgactacaat 50204522  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 33966746 - 33966641
Alignment:
Q  13 gaaaacagaggaaaagcgaccttgcgtaaagtcgaagcacggttgaggtgttgtgggccataggatcgtacgatc-tacgaaccagcactcgatcctgac 111  Q
    |||||||||| |||| ||| || | || ||||| ||||||||||||||||  ||||  | ||| |||||| |||| ||||| |||||||||||||||| |    
T  33966746 gaaaacagagcaaaaacgaactggagtgaagtcaaagcacggttgaggtgccgtggcacgtagaatcgtaagatcctacgagccagcactcgatcctggc 33966647  T
Q  112 tacaat 117  Q
    ||||||    
T  33966646 tacaat 33966641  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 1469075 - 1468978
Alignment:
Q  13 gaaaacagaggaaaagcgaccttgcgtaaagtcgaagcacggttgaggtgttgtgggccataggatcgtacgatctacgaaccagcactcgatcctgact 112  Q
    |||||||||| |||||||| | |||||||| || ||||||||||||||| |||||||   |||||||       ||||||||||||||||||||||||||    
T  1469075 gaaaacagagcaaaagcgaacctgcgtaaaatcaaagcacggttgaggtattgtgggatgtaggatc-------ctacgaaccagcactcgatcctgact 1468983  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 36881624 - 36881519
Alignment:
Q  13 gaaaacagaggaaaagcgaccttgcgtaaagtcgaagcacggttgaggtgttgtgggccataggatcgtacgatc-tacgaaccagcactcgatcctgac 111  Q
    |||||||||| |||| ||| | || ||||||| |||||||  ||||||||   |||| | |||||||| |||||| ||| ||||||||||| |||||||     
T  36881624 gaaaacagagcaaaaacgaacctgagtaaagttgaagcacaattgaggtgccttgggacgtaggatcgaacgatcctacaaaccagcactctatcctgaa 36881525  T
Q  112 tacaat 117  Q
    ||||||    
T  36881524 tacaat 36881519  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 40258876 - 40258811
Alignment:
Q  173 tctagttggtcacattatcgatattctaaa-tgatctttgaaatgacaaaacttcaatcaaatttg 237  Q
    |||||||  ||||||||||||||||| ||| |||||| |||||| |||||| || |||||||||||    
T  40258876 tctagttactcacattatcgatattcaaaaatgatctctgaaattacaaaattttaatcaaatttg 40258811  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 32368216 - 32368113
Alignment:
Q  15 aaacagaggaaaagcgaccttgcgtaaagtcgaagcacggttgaggtgttgtgggccataggatcgtacgat-ctacgaaccagcactcgatcctgacta 113  Q
    |||||||| |||| ||| | || ||||||||||||||| |||||| ||  ||||| | |||| ||||||||| |||||||||||||||||| || |||||    
T  32368216 aaacagagcaaaaacgaacatgagtaaagtcgaagcacagttgagatgccgtgggacgtagggtcgtacgatcctacgaaccagcactcgacccggacta 32368117  T
Q  114 caat 117  Q
    ||||    
T  32368116 caat 32368113  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 19781073 - 19781175
Alignment:
Q  15 aaacagaggaaaagcgaccttgcgtaaagtcgaagcacggttgaggtgttgtgggccataggatcgtacgat-ctacgaaccagcactcgatcctgacta 113  Q
    |||||||| |||| |||||||| ||||||||| |||||  ||||||||| || ||   ||||||||||| || |||| |||||||||||| |||||||||    
T  19781073 aaacagagcaaaa-cgaccttgagtaaagtcggagcacaattgaggtgtcgttggatgtaggatcgtactattctacaaaccagcactcgttcctgacta 19781171  T
Q  114 caat 117  Q
    ||||    
T  19781172 caat 19781175  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 23636722 - 23636686
Alignment:
Q  87 ctacgaaccagcactcgatcctgactacaatagtagt 123  Q
    ||||||||||||||||||||||||||||||| |||||    
T  23636722 ctacgaaccagcactcgatcctgactacaatggtagt 23636686  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 46082489 - 46082560
Alignment:
Q  38 gtaaagtcgaagcacggttgaggtgttgtgggccataggatcgtacgat-ctacgaaccagcactcgatcct 108  Q
    |||||||||||||||||||||||||  | ||| ||||| |||||||||| ||| || |||||||| ||||||    
T  46082489 gtaaagtcgaagcacggttgaggtgcggagggacatagaatcgtacgatcctatgagccagcactggatcct 46082560  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 25101051 - 25101126
Alignment:
Q  41 aagtcgaagcacggttgaggtgttgtgggccataggatcgtacgat-ctacgaaccagcactcgatcctgactaca 115  Q
    ||||||||||||||||||||||  ||||| ||||| |||||| ||| |||||| |||||||||||||||| |||||    
T  25101051 aagtcgaagcacggttgaggtgccgtgggacatagaatcgtaagatcctacgagccagcactcgatcctggctaca 25101126  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 6539482 - 6539585
Alignment:
Q  13 gaaaacagaggaaaagcgaccttgcgtaaagtcgaagcacggttgaggtgttgtgggccataggatcgtacgatc-tacgaaccagcactcgatcctgac 111  Q
    |||||||||| ||||  || | || ||||||| |||||||||||||| ||  |||||   ||||||| ||||||| ||||| ||||||||||||||| ||    
T  6539482 gaaaacagagcaaaaatgaacctgagtaaagttgaagcacggttgagatgacgtggggtgtaggatcatacgatcctacgatccagcactcgatccttac 6539581  T
Q  112 taca 115  Q
    ||||    
T  6539582 taca 6539585  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 23890006 - 23890047
Alignment:
Q  77 atcgtacgatc-tacgaaccagcactcgatcctgactacaat 117  Q
    ||||||||||| ||||| ||||||||||||||||||||||||    
T  23890006 atcgtacgatcctacgagccagcactcgatcctgactacaat 23890047  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 41377831 - 41377911
Alignment:
Q  38 gtaaagtcgaagcacggttgaggtgttgtgggccataggatcgtacgat-ctacgaaccagcactcgatcctgactacaat 117  Q
    |||||||||||||||| ||||||||  |||||   |||||||||||||| |||| ||||||| ||| ||||||||||||||    
T  41377831 gtaaagtcgaagcacgattgaggtgccgtgggaagtaggatcgtacgatcctacaaaccagctctcaatcctgactacaat 41377911  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 15402496 - 15402575
Alignment:
Q  38 gtaaagtcgaagcacggttgaggtgttgtgggccataggatcgtacgatc-tacgaaccagcactcgatcctgactacaa 116  Q
    |||||||||||| ||| ||||| ||   |||| ||||||| ||||| ||| |||||||||||||||||||||||||||||    
T  15402496 gtaaagtcgaagtacgattgagatgccatgggacataggaccgtacaatcctacgaaccagcactcgatcctgactacaa 15402575  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 43281120 - 43281226
Alignment:
Q  13 gaaaacagaggaaaagcgaccttgcgtaaagtcgaagcacggttgaggtgttgtgggccataggatcgtacgat-ctacgaaccagcactcgatcctgac 111  Q
    |||||||||| |||| ||| | || |||||||||||||| | ||||||||  |||||   ||| |||||||||| ||| ||||||||||  |||||||||    
T  43281120 gaaaacagagcaaaaacgaacctgagtaaagtcgaagcatgattgaggtgccgtgggatgtagaatcgtacgatcctatgaaccagcacgagatcctgac 43281219  T
Q  112 tacaata 118  Q
    |||||||    
T  43281220 tacaata 43281226  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 15400886 - 15400965
Alignment:
Q  38 gtaaagtcgaagcacggttgaggtgttgtgggccataggatcgtacgatc-tacgaaccagcactcgatcctgactacaa 116  Q
    |||||||||||| ||| ||||||||  | ||| | |||||||||||| || |||||||||||||||||| |||| |||||    
T  15400886 gtaaagtcgaagtacgattgaggtgccgcgggacgtaggatcgtacggtcctacgaaccagcactcgattctgattacaa 15400965  T

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Target: scaffold0768 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0768
Description:

Target: scaffold0768; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 4372 - 4269
Alignment:
Q  15 aaacagaggaaaagcgaccttgcgtaaagtcgaagcacggttgaggtgttgtgggccataggatcgtacga-tctacgaaccagcactcgatcctgacta 113  Q
    ||||||||||||||| | | || ||| |||||||||| ||||||||||  ||||| | |||||||||||||  |||  ||||||| ||||| ||| ||||    
T  4372 aaacagaggaaaagcaaacctgagtatagtcgaagcatggttgaggtgccgtgggacgtaggatcgtacgaccctataaaccagcgctcgaccctaacta 4273  T
Q  114 caat 117  Q
    ||||    
T  4272 caat 4269  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 7227215 - 7227137
Alignment:
Q  38 gtaaagtcgaagcacggttgaggtgttgtgggccataggatcgtacgat-ctacgaaccagcactcgatcctgactaca 115  Q
    |||||||||||||| ||| |||||| |||||| | ||| ||||||| || ||| || ||||||||| ||||||||||||    
T  7227215 gtaaagtcgaagcatggtcgaggtgctgtgggacgtagaatcgtacaatcctaagagccagcactcaatcctgactaca 7227137  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 55911229 - 55911184
Alignment:
Q  73 taggatcgtacgatc-tacgaaccagcactcgatcctgactacaat 117  Q
    |||||||||| |||| ||||||||||||||||||| ||||||||||    
T  55911229 taggatcgtatgatcctacgaaccagcactcgatcttgactacaat 55911184  T

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