View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14475_low_29 (Length: 262)

Name: NF14475_low_29
Description: NF14475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14475_low_29
NF14475_low_29
[»] chr1 (1 HSPs)
chr1 (5-244)||(46039523-46039762)
[»] chr6 (2 HSPs)
chr6 (62-214)||(22611493-22611645)
chr6 (89-197)||(5652900-5653008)
[»] chr8 (4 HSPs)
chr8 (100-189)||(12772265-12772354)
chr8 (100-189)||(12791125-12791214)
chr8 (89-152)||(34830906-34830969)
chr8 (91-182)||(12811946-12812037)
[»] chr7 (3 HSPs)
chr7 (74-200)||(5229978-5230104)
chr7 (91-188)||(28500180-28500277)
chr7 (74-173)||(28470222-28470321)
[»] chr2 (2 HSPs)
chr2 (89-200)||(25524830-25524941)
chr2 (91-167)||(5546380-5546456)
[»] chr4 (3 HSPs)
chr4 (89-191)||(45671417-45671519)
chr4 (142-200)||(45690290-45690348)
chr4 (91-188)||(42506626-42506723)
[»] scaffold0003 (1 HSPs)
scaffold0003 (141-188)||(334586-334633)
[»] chr3 (2 HSPs)
chr3 (89-200)||(38396724-38396835)
chr3 (88-151)||(249343-249406)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 5 - 244
Target Start/End: Original strand, 46039523 - 46039762
Alignment:
Q  5 aggaacaaaaggtggcataaagatatatcaaaagaaaatgaattactcactcagtagtactgtattgaaaaagcttgccaagactggagaagatgataag 104  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46039523 aggaacaaaaagtggcataaagatatatcaaaagaaaatgaattactcactcagtagtactgtattgaaaaagcttgccaagactggagaagatgataag 46039622  T
Q  105 agcaacttcagcatcacataacacagaaagttcaaaagctttcttcaacaaaccacttcttctctttgaaaatgttacttgtctattgatcttgttatgt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46039623 agcaacttcagcatcacataacacagaaagttcaaaagctttcttcaacaaaccacttcttctctttgaaaatgttacttgtctattgatcttgttatgt 46039722  T
Q  205 attctctccataatcaccttccctcttcccatattgcttt 244  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46039723 attctctccataatcaccttccctcttcccatattgcttt 46039762  T

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Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 62 - 214
Target Start/End: Complemental strand, 22611645 - 22611493
Alignment:
Q  62 tactgtattgaaaaagcttgccaagactggagaagatgataagagcaacttcagcatcacataacacagaaagttcaaaagctttcttcaacaaaccact 161  Q
    |||||||||| |||||||||||| | || || || |||||||| |||||||||||||||||||  ||| |||| ||||| |||||||||||||| |||||    
T  22611645 tactgtattggaaaagcttgccacggcttgaaaaaatgataagtgcaacttcagcatcacatagaacacaaagctcaaaggctttcttcaacaatccact 22611546  T
Q  162 tcttctctttgaaaatgttacttgtctattgatcttgttatgtattctctcca 214  Q
    |||||||||||| ||||||||||| ||||||||||| || | |||||||||||    
T  22611545 tcttctctttgagaatgttacttgcctattgatcttattctctattctctcca 22611493  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 197
Target Start/End: Complemental strand, 5653008 - 5652900
Alignment:
Q  89 tggagaagatgataagagcaacttcagcatcacataacacagaaagttcaaaagctttcttcaacaaaccacttcttctctttgaaaatgttacttgtct 188  Q
    |||||||||| ||||||||||||||||||||||| |  ||||| | |||| |||||||||| |  |  ||| |||||||||||| |||||||||||||||    
T  5653008 tggagaagataataagagcaacttcagcatcacaaagaacagataattcataagctttcttaagaagtccatttcttctctttgcaaatgttacttgtct 5652909  T
Q  189 attgatctt 197  Q
     || |||||    
T  5652908 gtttatctt 5652900  T

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Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 100 - 189
Target Start/End: Complemental strand, 12772354 - 12772265
Alignment:
Q  100 ataagagcaacttcagcatcacataacacagaaagttcaaaagctttcttcaacaaaccacttcttctctttgaaaatgttacttgtcta 189  Q
    ||||||||||| ||||||||||||||||| || |||||||| || ||||||||||||||| ||||||||||||| |||||||||||||||    
T  12772354 ataagagcaacctcagcatcacataacactgacagttcaaaggccttcttcaacaaaccatttcttctctttgagaatgttacttgtcta 12772265  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 100 - 189
Target Start/End: Complemental strand, 12791214 - 12791125
Alignment:
Q  100 ataagagcaacttcagcatcacataacacagaaagttcaaaagctttcttcaacaaaccacttcttctctttgaaaatgttacttgtcta 189  Q
    ||||||||||| ||||||||||||||||| || |||||||| || ||||||||||||||| ||||||||||||| |||||||||||||||    
T  12791214 ataagagcaacctcagcatcacataacactgacagttcaaaggccttcttcaacaaaccatttcttctctttgagaatgttacttgtcta 12791125  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 34830906 - 34830969
Alignment:
Q  89 tggagaagatgataagagcaacttcagcatcacataacacagaaagttcaaaagctttcttcaa 152  Q
    |||||||||||||||||||||||||||||||||| |  |||||||||||| ||||||| |||||    
T  34830906 tggagaagatgataagagcaacttcagcatcacaaagaacagaaagttcataagcttttttcaa 34830969  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 12811946 - 12812037
Alignment:
Q  91 gagaagatgataagagcaacttcagcatcacataacacagaaagttcaaaagctttcttcaacaaaccacttcttctctttgaaaatgttac 182  Q
    ||||| |||||||| ||||||||||||||||| |  ||||| |||||| |||||||||| | ||||||| ||||||| ||||| || |||||    
T  12811946 gagaaaatgataagggcaacttcagcatcacagagaacagacagttcataagctttcttgagcaaaccatttcttctttttgagaaagttac 12812037  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 200
Target Start/End: Complemental strand, 5230104 - 5229978
Alignment:
Q  74 aaagcttgccaagactggagaagatgataagagcaacttcagcatcacataacacagaaagttcaaaagctttcttcaacaaaccacttcttctctttga 173  Q
    ||||||| ||| || |||||||||||||||||||||| ||||||||||| |  |||||||||||| |||||||||| |  | |||| |||||||||| |     
T  5230104 aaagctttccacgagtggagaagatgataagagcaacctcagcatcacaaagaacagaaagttcataagctttcttaagaagaccatttcttctcttagc 5230005  T
Q  174 aaatgttacttgtctattgatcttgtt 200  Q
    |||||| |||||||| || ||||||||    
T  5230004 aaatgtaacttgtctgtttatcttgtt 5229978  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 188
Target Start/End: Original strand, 28500180 - 28500277
Alignment:
Q  91 gagaagatgataagagcaacttcagcatcacataacacagaaagttcaaaagctttcttcaacaaaccacttcttctctttgaaaatgttacttgtct 188  Q
    |||||||||||||||||||||||||||||||| |  ||||| || ||||| |||||||||||||||||| | |  |||||||| ||||| ||||||||    
T  28500180 gagaagatgataagagcaacttcagcatcacagagaacagatagctcaaatgctttcttcaacaaaccattacgcctctttgagaatgtcacttgtct 28500277  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 173
Target Start/End: Complemental strand, 28470321 - 28470222
Alignment:
Q  74 aaagcttgccaagactggagaagatgataagagcaacttcagcatcacataacacagaaagttcaaaagctttcttcaacaaaccacttcttctctttga 173  Q
    ||||||| ||| |||| ||||| |||||||||||||  |||||||||||||  || || |||||| | ||||| |||| ||||||| ||||||| |||||    
T  28470321 aaagctttccacgacttgagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttga 28470222  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 200
Target Start/End: Complemental strand, 25524941 - 25524830
Alignment:
Q  89 tggagaagatgataagagcaacttcagcatcacataacacagaaagttcaaaagctttcttcaacaaaccacttcttctctttgaaaatgttacttgtct 188  Q
    |||||||||  ||||||||||||||||||||||| | |||||| |  |||  ||||||||| |  ||||||  ||||||||||||||| |||||||| ||    
T  25524941 tggagaagacaataagagcaacttcagcatcacaaagcacagagatctcatgagctttcttgagtaaaccagatcttctctttgaaaaagttacttgcct 25524842  T
Q  189 attgatcttgtt 200  Q
    ||||||||||||    
T  25524841 attgatcttgtt 25524830  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 5546456 - 5546380
Alignment:
Q  91 gagaagatgataagagcaacttcagcatcacataacacagaaagttcaaaagctttcttcaacaaaccacttcttct 167  Q
    |||||||  |||||||||||||| |||||||| |  ||||| | |||| | |||||||||||||||||| |||||||    
T  5546456 gagaagactataagagcaacttctgcatcacaaagaacagataattcatatgctttcttcaacaaaccatttcttct 5546380  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 89 - 191
Target Start/End: Complemental strand, 45671519 - 45671417
Alignment:
Q  89 tggagaagatgataagagcaacttcagcatcacataacacagaaagttcaaaagctttcttcaacaaaccacttcttctctttgaaaatgttacttgtct 188  Q
    |||||||||||||||||||||||||||||||||| |  || ||||||||| |||| ||||| |  | |||| |||||||||| | |||||| ||||||||    
T  45671519 tggagaagatgataagagcaacttcagcatcacaaagaactgaaagttcataagccttcttgagtacaccatttcttctcttagcaaatgtgacttgtct 45671420  T
Q  189 att 191  Q
    |||    
T  45671419 att 45671417  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 45690348 - 45690290
Alignment:
Q  142 gctttcttcaacaaaccacttcttctctttgaaaatgttacttgtctattgatcttgtt 200  Q
    ||||||||||||||||||   |||||||||||||| || ||||||||||||||||||||    
T  45690348 gctttcttcaacaaaccagaccttctctttgaaaaagtgacttgtctattgatcttgtt 45690290  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 188
Target Start/End: Original strand, 42506626 - 42506723
Alignment:
Q  91 gagaagatgataagagcaacttcagcatcacataacacagaaagttcaaaagctttcttcaacaaaccacttcttctctttgaaaatgttacttgtct 188  Q
    ||||||| ||| || || |||||||||||||| | ||| ||||||||||| || || || | ||  ||| ||||||||||||| || |||||||||||    
T  42506626 gagaagacgatgagtgcgacttcagcatcacaaagcactgaaagttcaaaggcctttttaagcagtccatttcttctctttgagaaagttacttgtct 42506723  T

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Target: scaffold0003 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 188
Target Start/End: Original strand, 334586 - 334633
Alignment:
Q  141 agctttcttcaacaaaccacttcttctctttgaaaatgttacttgtct 188  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  334586 agctttcttcaacaacccacttcttctctttgaaaatgtaacttgtct 334633  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 200
Target Start/End: Complemental strand, 38396835 - 38396724
Alignment:
Q  89 tggagaagatgataagagcaacttcagcatcacataacacagaaagttcaaaagctttcttcaacaaaccacttcttctctttgaaaatgttacttgtct 188  Q
    ||||||||| ||| |||||||| || |||||||| |  |||||||||||| ||||||| ||||| | |||| ||||||  |||| ||| || ||||||||    
T  38396835 tggagaagacgatgagagcaacctctgcatcacaaagaacagaaagttcataagcttttttcaaaagaccatttcttcgttttgcaaaggtaacttgtct 38396736  T
Q  189 attgatcttgtt 200  Q
     |||||||||||    
T  38396735 gttgatcttgtt 38396724  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 249343 - 249406
Alignment:
Q  88 ctggagaagatgataagagcaacttcagcatcacataacacagaaagttcaaaagctttcttca 151  Q
    ||||||||||  || |||||||||||||||||||| || || || |||||| ||||||||||||    
T  249343 ctggagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagctttcttca 249406  T

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