View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14475_low_32 (Length: 240)
Name: NF14475_low_32
Description: NF14475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14475_low_32 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 53870170 - 53869951
Alignment:
| Q |
5 |
gaaatttatggttgaaatagaaattgggttgcaannnnnnnctttaaacaaattttcatcttagtctatgacataatnnnnnnnnnnnnncatcttagaa |
104 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
53870170 |
gaaatttatggttgaagtagaaattgggttgcaaattttttctttaaacaaattttcatcttagtctatgacataataaaaattaaaaaacatcttagaa |
53870071 |
T |
|
| Q |
105 |
gacccatacaagttacagctaaaactagaaaacatggaattgtatttggtaaaaaacacttgctgaggagttgggatgtaagagaaacaatgagtggttg |
204 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53870070 |
gacccatagaagttacagctaaaactagaaaacatggaattgtatttggtaaaaaacacttgctgaggagttgggatgtaagagaaacaatgagtggttg |
53869971 |
T |
|
| Q |
205 |
tctagaagatgatgggtatg |
224 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
53869970 |
tctagaagatgatgggtatg |
53869951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 5277945 - 5277726
Alignment:
| Q |
5 |
gaaatttatggttgaaatagaaattgggttgcaannnnnnnctttaaacaaattttcatcttagtctatgacataatnnnnnnnnnnnnncatcttagaa |
104 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5277945 |
gaaatttatggttgaagtagaaattgggttgcaaattttttctttaaacaaattttcatcttagtctatgacataataaaaattaaaaaacatcttagaa |
5277846 |
T |
|
| Q |
105 |
gacccatacaagttacagctaaaactagaaaacatggaattgtatttggtaaaaaacacttgctgaggagttgggatgtaagagaaacaatgagtggttg |
204 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5277845 |
gacccataaaagttacagctaaaactagaaaacatggaattgtatttggtaaaaaacacttgctgaggaattgggatgtaagagaaacaatgagtggttg |
5277746 |
T |
|
| Q |
205 |
tctagaagatgatgggtatg |
224 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
5277745 |
tctagaagatgatgggtatg |
5277726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 95 - 224
Target Start/End: Complemental strand, 40727398 - 40727269
Alignment:
| Q |
95 |
catcttagaagacccatacaagttacagctaaaactagaaaacatggaattgtatttggtaaaaaacacttgctgaggagttgggatgtaagagaaacaa |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40727398 |
catcttagaagacccatacaagttacagctaaaactagaaaatatgaaattgtatttggtaaaaaacacttgctgaggagttgggatgtaagagaaacaa |
40727299 |
T |
|
| Q |
195 |
tgagtggttgtctagaagatgatgggtatg |
224 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |
|
|
| T |
40727298 |
tgaggggttgtctagaagatgatgggtatg |
40727269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 40727484 - 40727420
Alignment:
| Q |
1 |
atacgaaatttatggttgaaatagaaattgggttgcaannnnnnnctttaaacaaattttcatct |
65 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
40727484 |
atacgaaatttatggttgaagtagaaattgggttgcaaattttttctttgaacaaattttcatct |
40727420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 624965 - 625187
Alignment:
| Q |
1 |
atacgaaatttatggttgaaatagaaattgggttgcaannnnnnnctttaaacaaattttcatcttagtctatgacataatnnnnnnnnnnnnncatctt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
624965 |
atacgaaatttatggttgaagtagaaattgggttgcaaattttttttttaaacaaattttcatcttagtctatgacataataaaaattaaaaaacatctt |
625064 |
T |
|
| Q |
101 |
agaagacccatacaagttacagctaaaactagaaaacatggaattgtatttggtaaaaaacacttgctgaggagttgggatgtaagagaaacaatgagtg |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
625065 |
agaagacccatacaagttacaactaaaactagaaaacatggaattgtatttggtaaaatacacttgctgaggagttgggatgtaagagaaacaatgagtg |
625164 |
T |
|
| Q |
201 |
gttgtctagaagatgatgggtatg |
224 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
625165 |
gttgt-tagaagatgatgggtatg |
625187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University