View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14475_low_38 (Length: 227)
Name: NF14475_low_38
Description: NF14475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14475_low_38 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 33556646 - 33556874
Alignment:
| Q |
1 |
actggtagtggaatatttgtagccaatggagaagatgaggccccagaggatggcagtgctaacccttcagcaaataaaaccggaattcgcatgtaccagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33556646 |
actggtagtggaatatttgtagccaatggagaagatgaggccccagaggatggcagtgctaacccttcagcaaataaaaccggaattcgcatgtaccagg |
33556745 |
T |
|
| Q |
101 |
tattgcgnnnnnnngaggaaaataaaacagata--ccgacttatctgtatctatcagactatcattgttttgcaattaatttctggtaacttgtattcga |
198 |
Q |
| |
|
||||| | ||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
33556746 |
tattgtgtttttttgaggaaaataaaacagatactctgacttatttgtatctatcagattatcattgttttgcaatggatttctgctaacttgtattcga |
33556845 |
T |
|
| Q |
199 |
attgtatgctgatgaaaattgcagcaagc |
227 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
33556846 |
attgtatgctgatgaaaattgcagcaagc |
33556874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 13519103 - 13519005
Alignment:
| Q |
7 |
agtggaatatttgtagccaatggagaagatgaggccccagaggatggcagtgctaacccttcagcaaataaaaccggaattcgcatgtaccaggtattg |
105 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| || |||||||| |||| |||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13519103 |
agtggaatattagtagccaatggagaagatgaggcctcaaaggatggcggtgccaaccgttcagcaaataaaaccggaatttgcatgtaccaggtattg |
13519005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 56559787 - 56559681
Alignment:
| Q |
1 |
actggtagtggaatatttgtagccaatggagaagatgaggccccagaggatggcagtgctaacccttcagcaaataaaaccggaattcgcatgtaccagg |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
56559787 |
actggcagtggaatatttgtagccaatggagaagatgaggcctcagaggatggcagtgccaacccttcagcaaataaaaccggaatttgcatgtaccagg |
56559688 |
T |
|
| Q |
101 |
tattgcg |
107 |
Q |
| |
|
||||||| |
|
|
| T |
56559687 |
tattgcg |
56559681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 1845105 - 1844999
Alignment:
| Q |
1 |
actggtagtggaatatttgtagccaatggagaagatgaggccccagaggatggcagtgctaacccttcagcaaataaaaccggaattcgcatgtaccagg |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||| ||||||||| ||||||| |||||||| ||| |
|
|
| T |
1845105 |
actggcagtggaatatttgtagccaatggagaagatgaggcctcagaagatggcagtgccaacccttcaacaaataaaatcggaatttgcatgtacgagg |
1845006 |
T |
|
| Q |
101 |
tattgcg |
107 |
Q |
| |
|
||||||| |
|
|
| T |
1845005 |
tattgcg |
1844999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University