View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14476_high_1 (Length: 558)
Name: NF14476_high_1
Description: NF14476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14476_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 538; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Original strand, 22868361 - 22868902
Alignment:
| Q |
1 |
aatctcttgcttttggtatgaacatttccttaattggggaataagaaaattgtttggaaagacagcttgatcacactttcatgaagagggtattgtcact |
100 |
Q |
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| T |
22868361 |
aatctcttgcttttggtatgaacatttccttaattggggaataagaaaattgtttggaaagacagcttgatcacactttcatgaagagggtattgtcact |
22868460 |
T |
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| Q |
101 |
tcaacggtgcacgatggaagcacaatccttcactttttccttattccctataatggatgcgtggtcctttagatgtttttggtggtggaagggattaatg |
200 |
Q |
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| T |
22868461 |
tcaacggtgcacgatggaagcacaatccttcactttttccttattccctataatggatgcgtggtcctttagatgtttttggtggtggaagggattaatg |
22868560 |
T |
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| Q |
201 |
ccaatacacttttcactttctctacgaatgttgcaacaatacttgtggaagaagtcttgtctgcatctatgaaaaaatttgttggaaacatggttgttgt |
300 |
Q |
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| T |
22868561 |
ccaatacacttttcactttctctacgaatgttgcaacaatacttgtggaagaagtcttgtctgcatctatgaaaaaatttgttggaaacatggttgttgt |
22868660 |
T |
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| Q |
301 |
gttaatgcatcttgagatttattccttgatgaagcgggatctgaatataaaatgtattttccagtatcatgaacaacgctatgacgtttgtttcagaatt |
400 |
Q |
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| T |
22868661 |
gttaatgcatcttgagatttattccttgatgaagcgggatctgaatataaaatgtattttccagtatcatgaacaacgctatgacgtttgtttcagaatt |
22868760 |
T |
|
| Q |
401 |
aaaggctgtgaaattctgatctgaaagttctgccaggataataaaaaattggcaaaatccaaatgcatgttccattaatcttgtgttgagcatttgtttt |
500 |
Q |
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| T |
22868761 |
aaaggctgtgaaattctgatctaaaagttctgccaggataataaaaaattggcaaaatccaaatgcatgttccattaatcttgtgttgagcatttgtttt |
22868860 |
T |
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| Q |
501 |
atcattttagccacaagtcatgtaaaacaaacaccttgttac |
542 |
Q |
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| T |
22868861 |
atcattttagccacaagtcatgtaaaacaaacaccttgttac |
22868902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 174 - 442
Target Start/End: Original strand, 22802003 - 22802270
Alignment:
| Q |
174 |
tgtttttggtggtggaagggattaatgccaatacacttttcactttctctacgaatgttgcaacaatacttgtggaagaagtcttgtctgcatctatgaa |
273 |
Q |
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| T |
22802003 |
tgtttttggtggtggaagggattaatgccaatacacttttcactttctctacgaatgttggaacaatacttgtggaagaagtcttgtctgcatctatgaa |
22802102 |
T |
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| Q |
274 |
aaaatttgttggaaacatggttgttgtgttaatgcatcttgagatttattccttgatgaagcgggatctgaatataaaatgtattttccagtatcatgaa |
373 |
Q |
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| T |
22802103 |
aaaatttgttggaaacatggttgctgtgttaatgcatcttgagttttattccttgacgaggcgggatctgaatataaaatgtattctccagtatcatgaa |
22802202 |
T |
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| Q |
374 |
caacgctatgacgtttgtttcagaattaaaggctgtgaaattctgatctgaaagttctgccaggataat |
442 |
Q |
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| T |
22802203 |
-gacactatgacgtttatttcagatttaaaggctttgaaattcttatctgaaagttctgccaggataat |
22802270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 5 - 174
Target Start/End: Original strand, 22801490 - 22801656
Alignment:
| Q |
5 |
tcttgcttttggtatgaacatttccttaattggggaataagaaaattgtttggaaagacagcttgatcacactttcatgaagagggtattgtcacttcaa |
104 |
Q |
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| T |
22801490 |
tcttgcttttggtatgaacattcccttaattggggaatgacaaaattgtttgtaaagacggc--gctcacactttgatgaagtgggtattgtcacttcaa |
22801587 |
T |
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| Q |
105 |
cggtgcacgatggaagcacaatccttcactttttccttattccctataatggatgcgtggtcctttagat |
174 |
Q |
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| T |
22801588 |
cggtgcagg-tggaagcacaatccttcactttttcctaattccctataatggatgcttgatccttaagat |
22801656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 444 - 542
Target Start/End: Original strand, 22802299 - 22802397
Alignment:
| Q |
444 |
aaaaattggcaaaatccaaatgcatgttccattaatcttgtgttgagcatttgttttatcattttagccacaagtcatgtaaaacaaacaccttgttac |
542 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||| |||||||||| |
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| T |
22802299 |
aaaaattggcaaaatccaaatgcatgttccattaatcttgtgttgagcattggttttatcattttagccacaagtaatggaaaacaaaaaccttgttac |
22802397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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