View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14476_high_17 (Length: 246)
Name: NF14476_high_17
Description: NF14476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14476_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 50 - 228
Target Start/End: Original strand, 18170400 - 18170570
Alignment:
| Q |
50 |
atacttactagctgcacctccaagttgatcgattgcatcaatgaatctttggtgaagttcaggagtccatttgagccttggttttgcatcagtggataga |
149 |
Q |
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| T |
18170400 |
atacttactatctgcacctccaagttgattaattgcatcaatgaatctttggtgaagttcaggagtccatttgagccttggttttgcatcagtggataga |
18170499 |
T |
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| Q |
150 |
acaaaatgcatactttgattctgcatgttttggtccttttagatttgcatcaatatatgaaagatatagtaagtttctc |
228 |
Q |
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| T |
18170500 |
acaaaatgcatactttgattctgcatgt--------ttttagatttgcatcaatatatgaaagatatagtaagtttctc |
18170570 |
T |
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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 166
Target Start/End: Original strand, 31749304 - 31749418
Alignment:
| Q |
52 |
acttactagctgcacctccaagttgatcgattgcatcaatgaatctttggtgaagttcaggagtccatttgagccttggttttgcatcagtggatagaac |
151 |
Q |
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||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||| | ||| || || |||||||| || ||||| |
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| T |
31749304 |
acttactttctgcacctccaagttgattaattgcatcagtgaatctttggtgaagttcatgagtccatttcaacctaggcttagcatcagtagaaagaac |
31749403 |
T |
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| Q |
152 |
aaaatgcatactttg |
166 |
Q |
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| T |
31749404 |
caaacgcatgctttg |
31749418 |
T |
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