View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14476_high_2 (Length: 547)
Name: NF14476_high_2
Description: NF14476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14476_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 6 - 295
Target Start/End: Complemental strand, 31407523 - 31407234
Alignment:
| Q |
6 |
atgtagatacttgacgccttgaacaaaggagaaattccatcatcaggctctcttgtggaggttttcaacaaaggtattattgagagatgtctcaagatat |
105 |
Q |
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| T |
31407523 |
atgtagatacttgacgccttgaacaaaggagaaattccatcatcaggctctcttgtggaggttttcaacaaaggtattattgagagatgtctcaagttat |
31407424 |
T |
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| Q |
106 |
atggtgaaaagatggcaacactggatctacctctttcagaggaatatctgcaaggggtccataataggtctagaaatgaagtcatgaaagtttttgatca |
205 |
Q |
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| T |
31407423 |
atggtgaaaagatggcaacactggatctacctctttcagaggaatatctgcaaggggtccataataggtctagaaatgaagtcatgaaagtttttgatca |
31407324 |
T |
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| Q |
206 |
gcagcattttggtcatcaccatgctaagaaatcaaccatgcagctgaatgaagaaataaaaaaggtgctgtttatgttagtatagtaaat |
295 |
Q |
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| T |
31407323 |
gcagcattttggtcatcaccatgctaagaaatcaaccatgcagctgaatgaagaaataaaaaaggtgctgtttatgttagtatagtaaat |
31407234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 279 - 541
Target Start/End: Complemental strand, 31407218 - 31406957
Alignment:
| Q |
279 |
atgttagtatagtaaataaaagatgaaaacgagaataggataaaggagaaatctcttgtaacctaaaatatattagcaataattacgatagtgagtgcct |
378 |
Q |
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| T |
31407218 |
atgttagtatagtaaataaaagctgaaaat-ataattggctaattgagaaatctcttggaacctaaaatatattagcaaaaattacgacagtgatttcct |
31407120 |
T |
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| Q |
379 |
caaatcaaatatattttgatggttttgttaagtatggaagatcctttatatagtcatcttgttgatggaagtttcaaccatttatatttcaagatttagt |
478 |
Q |
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| T |
31407119 |
caaatcaaatatattttgatggttttgttaagtatggaagatcctttatatagtcatcttgttgatggaagtttcaaccaattatatttcaagatttagt |
31407020 |
T |
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| Q |
479 |
aataatttatccgggcaaaatattgcagatgtataaaaatgtacttctgcaaaaagagtatca |
541 |
Q |
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| T |
31407019 |
aataatttatctggggaaaatcttgcagatgtataagaatgttattttgcaaaatgagtatca |
31406957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 9 - 263
Target Start/End: Original strand, 38494571 - 38494825
Alignment:
| Q |
9 |
tagatacttgacgccttgaacaaaggagaaattccatcatcaggctctcttgtggaggttttcaacaaaggtattattgagagatgtctcaagatatatg |
108 |
Q |
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||||||||||| ||||||||||| ||||| ||||||||| |||| |||||||||||| |||||||||| | ||| |||| |||||||| ||| |||| |
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| T |
38494571 |
tagatacttgaagccttgaacaagggagagattccatcaacaggttctcttgtggagattttcaacaaggacattcttgaaagatgtcttaagttataca |
38494670 |
T |
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| Q |
109 |
gtgaaaagatggcaacactggatctacctctttcagaggaatatctgcaaggggtccataataggtctagaaatgaagtcatgaaagtttttgatcagca |
208 |
Q |
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||||||||||||| ||| ||| |||||||||| |||| | |||||| |||| |||| | | | ||||| ||| | |||| ||| || |||||||| |
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| T |
38494671 |
gtgaaaagatggccacattggctctacctcttccagaaggatatcttcaagcttcccatgacatggctagaggtgacgccatgcaagcattcgatcagca |
38494770 |
T |
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| Q |
209 |
gcattttggtcatcaccatgctaagaaatcaaccatgcagctgaatgaagaaata |
263 |
Q |
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|||||||| | ||||||||||||||| ||| || ||| ||| ||||||||||| |
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| T |
38494771 |
acattttggccgtcaccatgctaagaagtcagtcacgcaactggatgaagaaata |
38494825 |
T |
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