View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14476_high_3 (Length: 544)
Name: NF14476_high_3
Description: NF14476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14476_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 80 - 472
Target Start/End: Complemental strand, 43560633 - 43560245
Alignment:
| Q |
80 |
gtgaaacttggcattcattttaaaataatgagataatgagaggtaacaaagtccatgtgaatgtgtcacatacattatgcattatgtatgtagaataggg |
179 |
Q |
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| T |
43560633 |
gtgaaacttggcattcattttaaaataatgagataatgagaggtaacaaagtccatgtgaatgtgtcacatacattatgcattatgtatgtagaataggg |
43560534 |
T |
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| Q |
180 |
agggtatacagtccccacaagaagaaatatgaaagatgggaacgtttttggttttacattcttcctgcaattgcaaacagatctagtttctcattcctct |
279 |
Q |
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| T |
43560533 |
agggtatacagtccccacaagaagaaatgtgaaagatgggaacgtttttggttttacattcttcctgcaattgcaaacagatctagtttctcattcctct |
43560434 |
T |
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| Q |
280 |
gcactacccattcgtttgacatcgacgttacatgtacaccttaaattgatgtttcatctttggttatcgtagtagtagtaatggagaatgcaaaggaatt |
379 |
Q |
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| T |
43560433 |
gcactacccattcgtttgacatcgacgttacatgtacaccttaaattgatgtttcatctttggttatcgtagtagtagtaatggagaatgcaaaggaatt |
43560334 |
T |
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| Q |
380 |
gtacggctccaccatctcacaaatacacatgcctcaatcaaactcaaacctttcactttctctttttattttcaaacaaaagaaaagactctt |
472 |
Q |
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| T |
43560333 |
gtacggctccaccatctcacaaatacacatgcc----tcaaactcaaacctttcactttctctttttattttcaaacaaaagaaaagactctt |
43560245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 478 - 528
Target Start/End: Complemental strand, 43560135 - 43560085
Alignment:
| Q |
478 |
tgattttctaatcaacacaaattcatatcttcattttgtggtggcatggat |
528 |
Q |
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| T |
43560135 |
tgattttctaatcaacacaaattcatatcttcattttgtggtggcatggat |
43560085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 43560697 - 43560654
Alignment:
| Q |
13 |
tgagaagaaaatcacagatcaagtttcctatatacaatgtagtt |
56 |
Q |
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| T |
43560697 |
tgagaagaaaatcacagatcaagtttcctatatacaatgtagtt |
43560654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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