View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14476_low_11 (Length: 331)
Name: NF14476_low_11
Description: NF14476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14476_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 316
Target Start/End: Original strand, 32494603 - 32494900
Alignment:
| Q |
19 |
ttttttcttcatcagaatgcatcattcgtttgccaattgctattgatggtgccatgtagtctctttcatcattaaattgcaaattctttaatacattttc |
118 |
Q |
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| T |
32494603 |
ttttttcttcatcagaatgcatcattcgtttgccaattgctattgatggtgccatgtagtctctttcatcattaaattgcaaattctttaatacattttc |
32494702 |
T |
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| Q |
119 |
gttcctgtttctacaattgtacgatgtttatagaattatttactatcaattcattttattgtatttgtggtgatctatgtagctatttcatagtgatcaa |
218 |
Q |
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| T |
32494703 |
gttcctgtttctacaattgtacggtgtttatagaattatttactatcaattcattttattgtatttgtggtgatctatgtagctatttcatagtgatcaa |
32494802 |
T |
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| Q |
219 |
taaattgtaaattgaacattccatcttgagctcgaagtcatgaaattgcttgcgtgtttatattttttatggtgaatatattcttcttactctcttct |
316 |
Q |
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| T |
32494803 |
taaattgtaaattgaacattccatcttgaactcgaagtcatgaaattgcttgcgtgtttatattttttatggtgaatatattcttcttactctcttct |
32494900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 28596381 - 28596580
Alignment:
| Q |
17 |
aattttttcttcatcagaatgcatcattcgtttgccaattgctattgatggtgccatgtagtctctttcatcattaaattgcaaattctttaatacattt |
116 |
Q |
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| T |
28596381 |
aattctttcttcatcagcatgcatcatttgtttgccaattgctattaatggtgtctgttagtctctttcatcattaaatt---aattcttttatacattt |
28596477 |
T |
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| Q |
117 |
tcgttcctgtttctacaattgtacgatgtttatagaattatttactatcaattcattttattgtatttgtggtgatctatgtagctatttcatagtgatc |
216 |
Q |
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| T |
28596478 |
gcgttcctttttctacaattgtacggtgtttatataaagatttattatcaattcattttattgtatatgtg---------ttagctatttcatagtgatc |
28596568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 28596639 - 28596685
Alignment:
| Q |
226 |
taaattgaacattccatcttgagctcgaagtcatgaaattgcttgcg |
272 |
Q |
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| T |
28596639 |
taaattgaacattccatcttgagtacgaagtcatgaaattgcttgcg |
28596685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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