View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14476_low_15 (Length: 305)
Name: NF14476_low_15
Description: NF14476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14476_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 46527674 - 46527938
Alignment:
| Q |
1 |
ctgagtggtggcttggaatcatggagcggtttctatcaaagtataaggcctactcagatgggattatcacttaatgttggtgagacttctaccatatctt |
100 |
Q |
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| T |
46527674 |
ctgagtggtggcttggaatcatggagcggtttctatcaaagtataaggcctactcagatgggattatcgcttaatgttggtgagacttctaccatatctt |
46527773 |
T |
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| Q |
101 |
cctcnnnnnnnaatgggaaatgtctttaataatccaaagttcggacgataagtaaagtctaaccgttaattgtttcagttaggtttcgaagtatggttct |
200 |
Q |
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| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46527774 |
catatttttttaatgggaaatgtctttaataatccaaagttcggacgataagtaaagtctaaccgttaattgtttcagttaggtttcgaagtatggttct |
46527873 |
T |
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| Q |
201 |
cccgaacattaactgaagctcattaaccacttgagttcaaccacttgattcgtccttaacacaag |
265 |
Q |
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| T |
46527874 |
cccgaacattaactgaagctcattaaccacttgagttcaaccacttgattcgtccttaacacaag |
46527938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 40804424 - 40804462
Alignment:
| Q |
209 |
ttaactgaagctcattaaccacttgagttcaaccacttg |
247 |
Q |
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| T |
40804424 |
ttaacagaagctcattaaccacttgaattcaaccacttg |
40804462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 43030734 - 43030634
Alignment:
| Q |
1 |
ctgagtggtggcttggaatcatggagcggtttctatcaaagtataaggcctactcagatgggattatcacttaatgttggtgagacttctaccatatctt |
100 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||| | |||||||||||| |||||||||||||| |
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| T |
43030734 |
ctgagtggtggcttggaatcatggtgcggtttcttgcaaagtataaggcctactcagatgggattgtcacatgatgttggtgagaattctaccatatctt |
43030635 |
T |
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| Q |
101 |
c |
101 |
Q |
| |
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| |
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| T |
43030634 |
c |
43030634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 43030579 - 43030513
Alignment:
| Q |
124 |
ctttaataatccaaagttcggacgataagtaaagtctaaccgttaattgtttcagttaggtttcgaa |
190 |
Q |
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|||| ||||||||||||| || ||||||||||||||||||| ||||||||||||| | |||||||| |
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| T |
43030579 |
ctttgataatccaaagttaggccgataagtaaagtctaaccaataattgtttcagtcaagtttcgaa |
43030513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 43030459 - 43030423
Alignment:
| Q |
253 |
tccttaacacaagatgcatatctttgtttctcttcta |
289 |
Q |
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| T |
43030459 |
tccttaacacaagatgcatttctttgtttttcttcta |
43030423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 8141890 - 8141923
Alignment:
| Q |
214 |
tgaagctcattaaccacttgagttcaaccacttg |
247 |
Q |
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|||||||||||||||||||||| ||||||||||| |
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| T |
8141890 |
tgaagctcattaaccacttgagctcaaccacttg |
8141923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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