View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14476_low_18 (Length: 246)

Name: NF14476_low_18
Description: NF14476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14476_low_18
NF14476_low_18
[»] chr8 (5 HSPs)
chr8 (1-246)||(9981728-9981973)
chr8 (165-227)||(9987048-9987110)
chr8 (2-102)||(9987148-9987248)
chr8 (155-227)||(9985955-9986027)
chr8 (66-119)||(9986052-9986104)


Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 9981973 - 9981728
Alignment:
Q  1 cccattgtttgaattttcataaattccaacatattatgctcctaaatccaaaatagcggaaatcatttcattaaaggcaaacaattctatttcttgcatt 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  9981973 cccattgtttgaatttttataaattccaacatattatgctcctaaatccaaattagcggaaataatttcattaaaggcaaacaattctatttcttgcatt 9981874  T
Q  101 ttaaaaaggttgaaacaataccatgtaaagagtgaactttgacaagnnnnnnntgtgcaacacattgccaattcaagcttatgaacattgactaaaataa 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||       ||||||||||||||||||||||||||||||||| |||||||||||||    
T  9981873 ttaaaaaggttgaaacaataccatgaaaagagtgaactttgacaagaaaaaaatgtgcaacacattgccaattcaagcttatgaaccttgactaaaataa 9981774  T
Q  201 gtttattgtttcaatatttcattcaaaatctatgcatttattgtga 246  Q
    || ||||||||||||||||||||||||||| |||||||||||||||    
T  9981773 gtatattgtttcaatatttcattcaaaatccatgcatttattgtga 9981728  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 9987110 - 9987048
Alignment:
Q  165 ttgccaattcaagcttatgaacattgactaaaataagtttattgtttcaatatttcattcaaa 227  Q
    |||||||||||| | ||||||| | ||||||||||||||||||||||||||||||||||||||    
T  9987110 ttgccaattcaaacctatgaacttagactaaaataagtttattgtttcaatatttcattcaaa 9987048  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 9987248 - 9987148
Alignment:
Q  2 ccattgtttgaattttcataaattccaacatattatgctcctaaatccaaaatagcggaaatcatttcattaaaggcaaacaattctatttcttgcattt 101  Q
    |||||| |||||||||||||| || ||| |||||||| ||||||||||||| || ||  |||  ||||||||||| |||| ||||||||| |||||||||    
T  9987248 ccattgcttgaattttcataagtttcaatatattatgttcctaaatccaaattaacgagaatggtttcattaaagacaaataattctattgcttgcattt 9987149  T
Q  102 t 102  Q
    |    
T  9987148 t 9987148  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 9986027 - 9985955
Alignment:
Q  155 gtgcaacacattgccaattcaagcttatgaacattgactaaaataagtttattgtttcaatatttcattcaaa 227  Q
    ||||||||| ||| |||||||||  ||||||| | ||||||||||| |||||| |||||||||||||||||||    
T  9986027 gtgcaacacgttggcaattcaagtctatgaacttagactaaaataaatttattatttcaatatttcattcaaa 9985955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 9986104 - 9986052
Alignment:
Q  66 tttcattaaaggcaaacaattctatttcttgcattttaaaaaggttgaaacaat 119  Q
    ||||||||||| |||||||||||||||||||||||||||||| | |||||||||    
T  9986104 tttcattaaag-caaacaattctatttcttgcattttaaaaacgatgaaacaat 9986052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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