View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14476_low_20 (Length: 241)
Name: NF14476_low_20
Description: NF14476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14476_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 46527671 - 46527447
Alignment:
| Q |
1 |
tatgtgggttttttaaatccggagaatagtgtaagctcccaaatgatacatagctaaatatacaaattaaggtgtcagaaacaataacatgatatgttaa |
100 |
Q |
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| T |
46527671 |
tatgtggtttttttaaatccggagaatagtgtaagctcccaaatgatacatagctaaatatacaaattaaggtgtcagaaacaataacatgatatgttaa |
46527572 |
T |
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| Q |
101 |
aacttgaaagacaaagctcaaattcacctatgagatgcaagctccttcaatacaatgtcaatggcattgatagcttcttgtggagtttccacnnnnnnnc |
200 |
Q |
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| T |
46527571 |
aacttgaaagacaaagctcaaattcacctatgagatgcaagctccttcaatacaatgtcaatggcattgatagcttcttgtggagtttccactttttttc |
46527472 |
T |
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| Q |
201 |
cactgagaagctcatgtaactgatg |
225 |
Q |
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| T |
46527471 |
cactgagaagctcatgtaactgatg |
46527447 |
T |
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Target: chr7 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 43030737 - 43030928
Alignment:
| Q |
1 |
tatgtgggttttttaaatccggagaatagtgtaagctcccaaatgatacatagctaaatatacaaattaaggtgtcagaaacaataacatgatatgttaa |
100 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||| ||||| |||| || ||||||||||||| ||||||||||| |||||||| ||| |
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| T |
43030737 |
tatgtggtttatttaaatccggagaatagtgtaagctcccaaatgatgcatagataaagatgcaaattaaggtgtaagaaacaataatatgatatgataa |
43030836 |
T |
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| Q |
101 |
aacttgaaagacaaagctcaaattcacctatgagatgcaagctccttcaatacaatgtcaatggcattgatagcttcttgtggagtttccac |
192 |
Q |
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| T |
43030837 |
aatttgaaagaccaggcagaaattcacctatgagatgcaagctctttcaataaaatgtcaatggcattgatagcttcttggggagtttccac |
43030928 |
T |
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