View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14476_low_7 (Length: 363)
Name: NF14476_low_7
Description: NF14476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14476_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 27 - 344
Target Start/End: Complemental strand, 33346107 - 33345790
Alignment:
| Q |
27 |
agaacaggattttgcttctactacaatacaagggtttatcacaccaaacagaacaagaacnnnnnnntggtgaacatccacatccaccattcatacacag |
126 |
Q |
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| T |
33346107 |
agaacaggatttggcttctactacaatacaa---tataccacaccaaacagtacaagaacaaaaaaatggtgaacatccacatctaccgttcatacacag |
33346011 |
T |
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| Q |
127 |
tgacaccttcagagaaaacaccaaccaccacactctctctttccctctgtgatcaactcaaactccctaatcatggataccaactttacctcttcacaaa |
226 |
Q |
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| T |
33346010 |
taacaccttcagagaaaacaccaaccaccacactctctctttccctctgtgatcaactcaagctccctaatcatggataccaactttacctcttcacaaa |
33345911 |
T |
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| Q |
227 |
caaaaaccat---tcttcatcactcatctcttcaacaaacattctcataacctctctctccaaaacactcactcactactatccctttgcaggtagatta |
323 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33345910 |
caaaaaccattcatcttcatcactcatctcttcaacaaacattctcataacctctctctccaaaacactcactcactactatccctttgcaggtagatta |
33345811 |
T |
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| Q |
324 |
agctggatcaaaccacaaaac |
344 |
Q |
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| T |
33345810 |
agctggatcaaaccacaaaac |
33345790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 214
Target Start/End: Complemental strand, 33334365 - 33334282
Alignment:
| Q |
131 |
accttcagagaaaacaccaaccaccacactctctctttccctctgtgatcaactcaaactccctaatcatggataccaacttta |
214 |
Q |
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|||||| |||| |||||||| |||||||||||||||||||||||| || ||| |||| ||||||||||||| |||||| ||||| |
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| T |
33334365 |
accttccgagacaacaccaagcaccacactctctctttccctctgcgaacaaatcaagctccctaatcatgaataccagcttta |
33334282 |
T |
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