View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14476_low_8 (Length: 360)
Name: NF14476_low_8
Description: NF14476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14476_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 794262 - 794434
Alignment:
| Q |
13 |
aatatatacggagcaaatgtgatcttnnnnnnncgaaagatttatagcctagttctacttcttatacactacatccaatatctaagagcttcttgtaata |
112 |
Q |
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| T |
794262 |
aatatatatggagcaaatgtgatcttaaaaaaacgaaagatttatagcctagttctacttcttatacactacatccaatatctaagagcttcttgtaata |
794361 |
T |
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| Q |
113 |
ctatgcaacatgacttcttttttataagagatttttgatgagtcatcattactactcacttcgtctttctgaa |
185 |
Q |
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| T |
794362 |
ctccgcaacatgacttctttcttataagagatttttgatgagtcatcattactactcacttcgtctttctgaa |
794434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 251 - 344
Target Start/End: Original strand, 794500 - 794593
Alignment:
| Q |
251 |
tcaaggacaacactatatttttgcacagggaaacaattggaagagaatatatcagaactgaaatcatatttcgttttcatttagttgtaaattt |
344 |
Q |
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| T |
794500 |
tcaaggacaacactatatttttgcacaaggaaacaattggaagagaatatatcagaactgaaatcatatttcgttttcatttaattgtaaattt |
794593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 52 - 185
Target Start/End: Original strand, 4055835 - 4055968
Alignment:
| Q |
52 |
atttatagcctagttctacttcttatacactacatccaatatctaagagcttcttgtaatactatgcaacatgacttcttttttataagagatttttgat |
151 |
Q |
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||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||| |
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| T |
4055835 |
atttatagcctagttatacttcttatacactatatccaatatctaagagcttcttgtaatactccgcaacatgacttctttctcataagagatttttgat |
4055934 |
T |
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| Q |
152 |
gagtcatcattactactcacttcgtctttctgaa |
185 |
Q |
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| T |
4055935 |
gagtcatcattgctactcacttcgtctttctgaa |
4055968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 251 - 342
Target Start/End: Original strand, 4056034 - 4056125
Alignment:
| Q |
251 |
tcaaggacaacactatatttttgcacagggaaacaattggaagagaatatatcagaactgaaatcatatttcgttttcatttagttgtaaat |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4056034 |
tcaaggacaacactatatttttgcacagggaaacaatttgaagagaatatatcagaactgaaatcatatttcgttttcatttagttgtaaat |
4056125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 52 - 185
Target Start/End: Complemental strand, 25067972 - 25067839
Alignment:
| Q |
52 |
atttatagcctagttctacttcttatacactacatccaatatctaagagcttcttgtaatactatgcaacatgacttcttttttataagagatttttgat |
151 |
Q |
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||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||| |
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| T |
25067972 |
atttatagcctagttatacttcttatacactatatccaatatctaagagcttcttgtaatactccgcaacatgacttctttctcataagagatttttgat |
25067873 |
T |
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| Q |
152 |
gagtcatcattactactcacttcgtctttctgaa |
185 |
Q |
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| T |
25067872 |
gagtcatcattgctactcacttcgtctttctgaa |
25067839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 251 - 342
Target Start/End: Complemental strand, 25067773 - 25067682
Alignment:
| Q |
251 |
tcaaggacaacactatatttttgcacagggaaacaattggaagagaatatatcagaactgaaatcatatttcgttttcatttagttgtaaat |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25067773 |
tcaaggacaacactatatttttgcacagggaaacaatttgaagagaatatatcagaactgaaatcatatttcgttttcatttagttgtaaat |
25067682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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