View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14477_high_3 (Length: 236)
Name: NF14477_high_3
Description: NF14477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14477_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 38980688 - 38980473
Alignment:
| Q |
1 |
cctatgagtgcatcaaggcttccccatgcttgcctcagaggacatggacatggtgctggtggatttggatgcccataaaatggacaaattggtgtgtgaa |
100 |
Q |
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| T |
38980688 |
cctatgagtgcatcaaggcttccccatgcttgcctcagaggacatggacatggtgctggtggatttggatgcccataaaatggacaaattggtgtgtgaa |
38980589 |
T |
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| Q |
101 |
cttttgtcttgccaaattgatccaaatacctaaacaccatgataaattaaccaaaatagtattaaaaattatatacagctaaaattcgaatcatagctac |
200 |
Q |
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| T |
38980588 |
cttttgtcttgccaaattgatccaaatacctaaacaccatgataaattaaccaaaatagtattaaaaattatatacagctaaaattcgaatcatagctac |
38980489 |
T |
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| Q |
201 |
cgcaatttatagctat |
216 |
Q |
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|||||||||||||||| |
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| T |
38980488 |
cgcaatttatagctat |
38980473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 30503976 - 30504107
Alignment:
| Q |
1 |
cctatgagtgcatcaaggcttccccatgcttgcctcagaggacatggacatggtgctggtggatttggatgcccataaaatggacaaattggtgtgtgaa |
100 |
Q |
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| T |
30503976 |
cctatcagtgcatcaagactaccccaagcttgtcttaatggacatggacatggtgctggagggtttggatgtccatagaatggacaaattggtgtgtgca |
30504075 |
T |
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| Q |
101 |
cttttgtcttgccaaattgatccaaataccta |
132 |
Q |
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| T |
30504076 |
cttttgtcttgccaaattggtccaagtaccta |
30504107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 15970415 - 15970333
Alignment:
| Q |
7 |
agtgcatcaaggcttccccatgcttgcctcagaggacatggacatggtgctggtggatttggatgcccataaaatggacaaat |
89 |
Q |
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| T |
15970415 |
agtgcatcaagactaccccacgcttggcgaagaggacatggacatgatgcaggtggatttggatgtccataaaagggacaaat |
15970333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 33672088 - 33672168
Alignment:
| Q |
9 |
tgcatcaaggcttccccatgcttgcctcagaggacatggacatggtgctggtggatttggatgcccataaaatggacaaat |
89 |
Q |
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| T |
33672088 |
tgcatcaagacttccccaagcttgtcgtagaggacaaggacaaggtgcaggtgggtttggatgaccaaaaaatggacaaat |
33672168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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