View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14477_low_2 (Length: 330)
Name: NF14477_low_2
Description: NF14477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14477_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 42 - 315
Target Start/End: Complemental strand, 32954770 - 32954497
Alignment:
| Q |
42 |
gaatttcagagaaggtttaatgcacttaatataaagaggttgaaggagattcagtgttacagaggaataaggcatattcagggacttccttgtagaggac |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32954770 |
gaatttcagagaaggtttaatgcacttaatataaagaggttgaaggagattcagtgttacagaggaataaggcatattcagggacttccttgtagaggac |
32954671 |
T |
|
| Q |
142 |
aacgtaccaagaacaattgcaggacattgaagggtaagaaggttactgttgctggcaagaagaaaaagtaaatatttagtacctttttaatttagtcact |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32954670 |
aacgtaccaagaacaattgcaggacattgaagggtaagaaggttactgttgctggcaagaagaaaaagtaaatatttagtacctttttaatttagtcact |
32954571 |
T |
|
| Q |
242 |
tgatttgtgtatgagagtaagnnnnnnnntgttttgtataatggaattgttttgattaaattggatgtaatttt |
315 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32954570 |
tgatttgtgtatgagagtaagaaaaaaaatgttttggataatgcaattgttttgattaaattggatgtaatttt |
32954497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University