View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14477_low_3 (Length: 270)
Name: NF14477_low_3
Description: NF14477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14477_low_3 |
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| [»] scaffold0268 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 26 - 250
Target Start/End: Complemental strand, 41521127 - 41520903
Alignment:
| Q |
26 |
caaacgtgctaaagatggaatcaaagctgaaaatcgtaatagttcaagtcaccgtgatcctgcatttctatctatgtatgtgatgtttgtggagcgttgt |
125 |
Q |
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|||||||||||||||| |||| || || ||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||| |
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| T |
41521127 |
caaacgtgctaaagattgaataaatgccgaaaatcgtaatagttcaagtcaccgtgatcctgcatttgtaactacgtatgtgatgtttgtggagcgttgt |
41521028 |
T |
|
| Q |
126 |
aagaggatgaccaatgccgtgttgaagtgtggagatcctgaatatatacacaaaaccatggaaatggttgaaaataacactgaaaaattggaatcattaa |
225 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41521027 |
aagaggatggccaatgccgtgttgaagtgtggagatcctgaatatatacacaaaaccatggaaatggttgaaaatcacactgaaaaattggaatcattaa |
41520928 |
T |
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| Q |
226 |
ggaggggtgaagctgatgaattgcc |
250 |
Q |
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| |||||||||| |||||||||||| |
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| T |
41520927 |
gcaggggtgaagttgatgaattgcc |
41520903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 27049657 - 27049430
Alignment:
| Q |
22 |
ggaccaaacgtgctaaagatggaatcaaagctgaaaatcgtaatagttcaagtcaccgtgatcctgcatttctatctatgtatgtgatgtttgtggagcg |
121 |
Q |
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|||||||||||||||||||||||||||| || ||||| |||||||||||||||||| |||||||||||||| || ||| ||||||||||||||||||||| |
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| T |
27049657 |
ggaccaaacgtgctaaagatggaatcaatgccgaaaaccgtaatagttcaagtcactgtgatcctgcatttgtaactacgtatgtgatgtttgtggagcg |
27049558 |
T |
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| Q |
122 |
ttgtaagaggatgaccaatgccgtgttgaagtgtggagatcctgaatatatacacaaaaccatggaaatggttgaaaataacactgaaaaattggaatca |
221 |
Q |
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| T |
27049557 |
ttgtaagaggatggaaaatgcggtgttgaagtgtggagatcttgaatatatacataaaaccatggaaatggttgaaagtgacactgaaaaattggaatca |
27049458 |
T |
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| Q |
222 |
ttaaggaggggtgaagctgatgaattgc |
249 |
Q |
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| T |
27049457 |
ttaagcaggggtgaagttgatgaattgc |
27049430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 22276497 - 22276273
Alignment:
| Q |
20 |
atggaccaaacgtgctaaagatggaatcaaagctgaaaatcgtaatagttcaagtcaccgtgatcctgcatttctatctatgtatgtgatgtttgtggag |
119 |
Q |
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|||||||| |||||||||||||| |||||| || |||||| |||||||||||| |||||| |||||||||||| || ||| |||||| |||||| ||||| |
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| T |
22276497 |
atggaccagacgtgctaaagatgtaatcaatgccgaaaatggtaatagttcaactcaccgggatcctgcatttgtaactacgtatgttatgtttctggag |
22276398 |
T |
|
| Q |
120 |
cgttgtaagaggatgaccaatgccgtgttgaagtgtggagatcctgaatatatacacaaaaccatggaaatggttgaaaataacactgaaaaattggaat |
219 |
Q |
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| T |
22276397 |
cgttgcaagaggatggcaaacgcagtgttaaagtgtggcaatccaaactatatacacaaaaccatggaaatggttgaacaacacactgagaaattggaat |
22276298 |
T |
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| Q |
220 |
cattaaggaggggtgaagctgatga |
244 |
Q |
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||| | |||||||||| |||||| |
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| T |
22276297 |
catacaacaggggtgaagttgatga |
22276273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0268 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 14147 - 13945
Alignment:
| Q |
20 |
atggaccaaacgtgctaaagatggaatcaaagctgaaaatcgtaatagttcaagtcaccgtgatcctgcatttctatctatgtatgtgatgtttgtggag |
119 |
Q |
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||||||||||||||||||||||| |||||| || |||||| |||||||||||| |||||| |||||||||||| || ||| |||||| |||||| ||||| |
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| T |
14147 |
atggaccaaacgtgctaaagatgtaatcaatgccgaaaatggtaatagttcaactcaccgggatcctgcatttgtaactacgtatgttatgtttctggag |
14048 |
T |
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| Q |
120 |
cgttgtaagaggatgaccaatgccgtgttgaagtgtggagatcctgaatatatacacaaaaccatggaaatggttgaaaataacactgaaaaattggaat |
219 |
Q |
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||||| ||||||||| | || || ||||| |||||||| |||| | |||||||||||||||||||||||||||||| | ||||||| | |||||||| |
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| T |
14047 |
cgttgcaagaggatggcaaacgcagtgttaaagtgtggcaatccaaactatatacacaaaaccatggaaatggttgaacaacacactgagatattggaat |
13948 |
T |
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| Q |
220 |
cat |
222 |
Q |
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||| |
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| T |
13947 |
cat |
13945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 7659122 - 7659346
Alignment:
| Q |
20 |
atggaccaaacgtgctaaagatggaatcaaagctgaaaatcgtaatagttcaagtcaccgtgatcctgcatttctatctatgtatgtgatgtttgtggag |
119 |
Q |
| |
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||||| ||||||||||||||||| |||||| || ||||| |||||||||||||||||| ||||||| ||| || ||| |||||| |||||||||||| |
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| T |
7659122 |
atggatcaaacgtgctaaagatgtaatcaatgcccaaaattctaatagttcaagtcaccgggatcctggttttgtaactacgtatgttatgtttgtggag |
7659221 |
T |
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| Q |
120 |
cgttgtaagaggatgaccaatgccgtgttgaagtgtggagatcctgaatatatacacaaaaccatggaaatggttgaaaataacactgaaaaattggaat |
219 |
Q |
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||||||||||||||| | | |||||||| |||||||| |||| || ||||||||||||||| |||||||||||||||| ||||||| | |||||||| |
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| T |
7659222 |
cgttgtaagaggatggcaaccgccgtgttaaagtgtggtaatccagattatatacacaaaaccgtggaaatggttgaaaaacacactgagacattggaat |
7659321 |
T |
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| Q |
220 |
cattaaggaggggtgaagctgatga |
244 |
Q |
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|||| | | |||||||| |||||| |
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| T |
7659322 |
cattcaacatgggtgaagttgatga |
7659346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 24028529 - 24028753
Alignment:
| Q |
20 |
atggaccaaacgtgctaaagatggaatcaaagctgaaaatcgtaatagttcaagtcaccgtgatcctgcatttctatctatgtatgtgatgtttgtggag |
119 |
Q |
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|||||||| |||||||||||||| |||||| || |||||| |||||||||||| |||||| ||||| |||||| || ||| |||||| |||||| | ||| |
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| T |
24028529 |
atggaccagacgtgctaaagatgtaatcaatgccgaaaatggtaatagttcaactcaccgggatccagcatttgtaactacgtatgttatgtttctagag |
24028628 |
T |
|
| Q |
120 |
cgttgtaagaggatgaccaatgccgtgttgaagtgtggagatcctgaatatatacacaaaaccatggaaatggttgaaaataacactgaaaaattggaat |
219 |
Q |
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||||| ||||||||| | ||||| ||||| |||||||| |||| | |||||||||||||||||||||||||||||| | ||||||| |||||||||| |
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| T |
24028629 |
cgttgcaagaggatggcaaatgcagtgttaaagtgtggcaatccaaactatatacacaaaaccatggaaatggttgaacaacacactgataaattggaat |
24028728 |
T |
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| Q |
220 |
cattaaggaggggtgaagctgatga |
244 |
Q |
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||| | |||||||||| |||||| |
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| T |
24028729 |
catacaacaggggtgaagttgatga |
24028753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 7670324 - 7670121
Alignment:
| Q |
20 |
atggaccaaacgtgctaaagatggaatcaaagctgaaaatcgtaatagttcaagtcaccgtgatcctgcatttctatctatgtatgtgatgtttgtggag |
119 |
Q |
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||||||||||||||||||||||| |||||| || ||||| ||||||||||||||| || ||||||| ||| || ||| |||||| |||||||||||| |
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| T |
7670324 |
atggaccaaacgtgctaaagatgtaatcaatgcccaaaatgctaatagttcaagtcatcgggatcctggttttttaactacgtatgttatgtttgtggag |
7670225 |
T |
|
| Q |
120 |
cgttgtaagaggatgaccaatgccgtgttgaagtgtggagatcctgaatatatacacaaaaccatggaaatggttgaaaataacactgaaaaattggaat |
219 |
Q |
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||||||||||||| | | || || |||| || ||||| |||| || |||||||||||||||||| |||| |||||||| |||| || | |||||||| |
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| T |
7670224 |
cgttgtaagaggagggcaaacaccatgttaaaatgtggcaatccagattatatacacaaaaccatgaaaattgttgaaaaacacaccgagacattggaat |
7670125 |
T |
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| Q |
220 |
catt |
223 |
Q |
| |
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|||| |
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|
| T |
7670124 |
catt |
7670121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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