View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14478_high_1 (Length: 447)
Name: NF14478_high_1
Description: NF14478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14478_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 19 - 438
Target Start/End: Original strand, 42205449 - 42205874
Alignment:
| Q |
19 |
taacatagatataaaatcaacaatatgatacttgaacattaatcgttttcatacactcattcaacaatgatcattatttttctatctctcttttcctatc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205449 |
taacatagatataaaatcaacaatatgatacttgaacattaatcgttttcatacactcattcaacaatgatcattatttttctatctctcttttcctatc |
42205548 |
T |
|
| Q |
119 |
acatgattaacatatcatatctatcaaagtgtcgatggagacatggtcagtgt------gtgtgtgatacgcacctgtggccgcaacaagtagtacatgg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205549 |
acatgattaacatatcatatctatcaaagtgtcgatggagacatggtcagtgtgtgtgtgtgtgtgatacgcacctgtggccgcaacaagtagtacatgg |
42205648 |
T |
|
| Q |
213 |
ttcaaagtatatctccaaacaaatctgccagaatgaataaaaaatcagcattgtaacttacatatcaacaatgtataaagctagattagaaaaaacatca |
312 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205649 |
ttcaaagtatatctccaaacaaatctgccagaatgaataaaaaatcagcattgtaacttacatatcaacaatgtataaagctagattagaaaaaacatca |
42205748 |
T |
|
| Q |
313 |
caaggatttcattaccggacatgaaaacttctcggtgagttcatcggtgtaagggataacagcggacgacaaatcagaactcatcttgacgaaatttttc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205749 |
caaggatttcattaccggacatgaaaacttctcggtgagttcatcggtgtaagggataacagcggacgacaaatcagaactcatcttgacgaaatttttc |
42205848 |
T |
|
| Q |
413 |
agagaaagcgacgtaccttttcttct |
438 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
42205849 |
agagaaagcgacgtaccttttcttct |
42205874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 19 - 438
Target Start/End: Original strand, 42214317 - 42214742
Alignment:
| Q |
19 |
taacatagatataaaatcaacaatatgatacttgaacattaatcgttttcatacactcattcaacaatgatcattatttttctatctctcttttcctatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42214317 |
taacatagatataaaatcaacaatatgatacttgaacattaatcgttttcatacactcattcaacaatgatcattatttttctatctctcttttcctatc |
42214416 |
T |
|
| Q |
119 |
acatgattaacatatcatatctatcaaagtgtcgatggagacatggtcagtgt------gtgtgtgatacgcacctgtggccgcaacaagtagtacatgg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214417 |
acatgattaacatatcatatctatcaaagtgtcgatggagacatggtcagtgtgtgtgtgtgtgtgatacgcacctgtggccgcaacaagtagtacatgg |
42214516 |
T |
|
| Q |
213 |
ttcaaagtatatctccaaacaaatctgccagaatgaataaaaaatcagcattgtaacttacatatcaacaatgtataaagctagattagaaaaaacatca |
312 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42214517 |
ttcaaagtatatctccaaacaaatctgccagaatgaataaaaaatcagcattgtaacttacatatcaacaatgtataaagctagattagaaaaaacatca |
42214616 |
T |
|
| Q |
313 |
caaggatttcattaccggacatgaaaacttctcggtgagttcatcggtgtaagggataacagcggacgacaaatcagaactcatcttgacgaaatttttc |
412 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42214617 |
caaggatttcattaccggacatgaaaacttctcggtgagttcatcggtgtaagggataacagcggacgacaaatcagaactcatcttgacgaaatttttc |
42214716 |
T |
|
| Q |
413 |
agagaaagcgacgtaccttttcttct |
438 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
42214717 |
agagaaagcgacgtaccttttcttct |
42214742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 31720948 - 31720906
Alignment:
| Q |
102 |
atctctcttttcctatcacatgattaacatatcatatctatca |
144 |
Q |
| |
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|||||||||| |||||||||| |||||||||||| |||||||| |
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|
| T |
31720948 |
atctctctttacctatcacatcattaacatatcacatctatca |
31720906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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