View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14478_low_3 (Length: 294)

Name: NF14478_low_3
Description: NF14478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14478_low_3
NF14478_low_3
[»] chr2 (7 HSPs)
chr2 (14-247)||(11482573-11482805)
chr2 (14-129)||(27640866-27640981)
chr2 (33-138)||(17354449-17354553)
chr2 (33-174)||(30909054-30909192)
chr2 (22-129)||(8263493-8263599)
chr2 (49-174)||(42473864-42473988)
chr2 (247-275)||(11482511-11482539)
[»] scaffold0008 (2 HSPs)
scaffold0008 (37-174)||(36098-36234)
scaffold0008 (37-92)||(10602-10657)
[»] chr1 (5 HSPs)
chr1 (55-247)||(43058586-43058778)
chr1 (37-174)||(15842218-15842356)
chr1 (135-247)||(27324936-27325048)
chr1 (49-174)||(12882573-12882697)
chr1 (54-138)||(18113804-18113887)
[»] scaffold0778 (1 HSPs)
scaffold0778 (14-174)||(1124-1284)
[»] chr3 (7 HSPs)
chr3 (40-129)||(43465912-43466000)
chr3 (128-247)||(25911480-25911599)
chr3 (14-89)||(25807225-25807300)
chr3 (14-246)||(44521025-44521252)
chr3 (33-151)||(3650600-3650715)
chr3 (33-174)||(7441373-7441514)
chr3 (133-174)||(25893071-25893112)
[»] chr7 (5 HSPs)
chr7 (14-138)||(25090233-25090356)
chr7 (33-138)||(4998424-4998528)
chr7 (19-91)||(19706148-19706220)
chr7 (33-170)||(19706345-19706482)
chr7 (133-174)||(25090365-25090406)
[»] scaffold1390 (1 HSPs)
scaffold1390 (31-174)||(837-983)
[»] chr4 (2 HSPs)
chr4 (39-174)||(43226344-43226475)
chr4 (18-128)||(50376065-50376173)
[»] scaffold2061 (2 HSPs)
scaffold2061 (33-174)||(332-474)
scaffold2061 (37-91)||(150-204)
[»] chr5 (2 HSPs)
chr5 (36-174)||(6228687-6228820)
chr5 (33-89)||(26682911-26682967)
[»] chr8 (4 HSPs)
chr8 (33-124)||(33979884-33979974)
chr8 (144-239)||(25270047-25270142)
chr8 (36-129)||(6293942-6294030)
chr8 (33-176)||(33180261-33180405)
[»] scaffold0003 (1 HSPs)
scaffold0003 (83-174)||(303499-303590)


Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 14 - 247
Target Start/End: Complemental strand, 11482805 - 11482573
Alignment:
Q  14 atgcatatacttgttttggtagcggaggtttacataccttctaattttttgggatttcaaatctcctttatattgtctttgtcaattgaaaattccttca 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  11482805 atgcttatacttgttttggtagcggaggtttacataccttctaatttttcgggttttcaaatctcctttatattgtctt-gtcaattgaaaattccttca 11482707  T
Q  114 attaacagttgtattaaacaaaaaagattcgtaatttataccggtagtaaactatgtaattcannnnnnnaaagtacccgagctttttagtcaaattttt 213  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||       ||||||| | | ||||||||||||| ||||    
T  11482706 attaacagttgtattaaacaaaaaagattcgtaatttataccagtagtaaactatgtaattcatttttttaaagtactcaaactttttagtcaaactttt 11482607  T
Q  214 aatgacccatccaaactactttttctagctccgc 247  Q
    |||| |||| |||||||| |||||||| ||||||    
T  11482606 aatggcccacccaaactattttttctaactccgc 11482573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 27640866 - 27640981
Alignment:
Q  14 atgcatatacttgttttggtagcggaggtttacataccttctaattttttgggatttcaaatctcc-tttatattgtctttgtcaattgaaaattccttc 112  Q
    |||| |||||||| || || ||| |||||||||||| ||||||||||| |||| |||||||| ||| ||||||||||| ||||||||||||||||||| |    
T  27640866 atgcttatacttggttgggcagcagaggtttacatatcttctaattttctggggtttcaaatatccttttatattgtc-ttgtcaattgaaaattcctcc 27640964  T
Q  113 aattaacagttgtatta 129  Q
    |||||| ||||||||||    
T  27640965 aattaatagttgtatta 27640981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 138
Target Start/End: Complemental strand, 17354553 - 17354449
Alignment:
Q  33 tagcggaggtttacataccttctaattttttgggatttcaaatctcctttatattgtctttgtcaattgaaaattccttcaattaacagttgtattaaac 132  Q
    |||| |||||||||| |||||||||||||| ||| ||||||||||| ||||||||||| ||||||| |||||||||   ||||||| |||||||||| |     
T  17354553 tagctgaggtttacaaaccttctaatttttgggggtttcaaatctcttttatattgtc-ttgtcaactgaaaattctcccaattaagagttgtattataa 17354455  T
Q  133 aaaaaa 138  Q
    ||||||    
T  17354454 aaaaaa 17354449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 174
Target Start/End: Complemental strand, 30909192 - 30909054
Alignment:
Q  33 tagcggaggtttacataccttctaattttttgggatttcaaatctcctttatattgtctttgtcaattgaaaattccttcaattaacagttgtattaaac 132  Q
    |||||||||||||||||||||||| ||||||||| |||| |||||| || |||||||  ||||||| ||||||||||  ||||||| |||||| ||| |     
T  30909192 tagcggaggtttacataccttctatttttttggg-tttcgaatctctttgatattgt-attgtcaaatgaaaattcccccaattaagagttgttttata- 30909096  T
Q  133 aaaaaagattcgtaatttataccggtagtaaactatgtaatt 174  Q
    |||||| |||| ||||||||| |  ||||||||||| |||||    
T  30909095 aaaaaatattcataatttatatcattagtaaactatataatt 30909054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 8263493 - 8263599
Alignment:
Q  22 acttgttttggtagcggaggtttacataccttctaattttttgggatttcaaatctcctttatattgtctttgtcaattgaaaattccttcaattaacag 121  Q
    ||||| || ||||||| | ||||||| ||||| |||||||||||  ||||||||||||||||||||||| ||||||| |||||||| || |||||||||     
T  8263493 acttggttgggtagcgaaagtttacaaaccttataattttttggagtttcaaatctcctttatattgtc-ttgtcaactgaaaatttctccaattaacaa 8263591  T
Q  122 ttgtatta 129  Q
    || |||||    
T  8263592 ttctatta 8263599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 174
Target Start/End: Original strand, 42473864 - 42473988
Alignment:
Q  49 accttctaattttttgggatttcaaatctcctttatattgtctttgtcaattgaaaattccttcaattaacagttgtattaaacaaaaaagattcgtaat 148  Q
    |||||| ||| ||||||  ||||||||||| |||||||  | || |||||||||||||| |   |||||| |||||||||| | ||||||||||  ||||    
T  42473864 accttccaatcttttggagtttcaaatctcttttatataatatt-gtcaattgaaaatttcccaaattaagagttgtattataaaaaaaagatttataat 42473962  T
Q  149 ttataccggtagtaaactatgtaatt 174  Q
    ||||  | ||||||||||||||||||    
T  42473963 ttattgcagtagtaaactatgtaatt 42473988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 275
Target Start/End: Complemental strand, 11482539 - 11482511
Alignment:
Q  247 ctaacaaacttatttttgaaaatttatcc 275  Q
    |||||||||||||||||||||||||||||    
T  11482539 ctaacaaacttatttttgaaaatttatcc 11482511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 174
Target Start/End: Original strand, 36098 - 36234
Alignment:
Q  37 ggaggtttacataccttctaattttttgggatttcaaatctcctttatattgtctttgtcaattgaaaattccttcaattaacagttgtattaaacaaaa 136  Q
    ||||||||||| |||||||||| ||| ||| ||||||||||| ||||||||||||| |||||||||||||||   ||||||| |||||||||| | ||||    
T  36098 ggaggtttacaaaccttctaatctttgggggtttcaaatctcttttatattgtctt-gtcaattgaaaattctcccaattaagagttgtattataaaaaa 36196  T
Q  137 aagattcgtaatttataccggtagtaaactatgtaatt 174  Q
    ||||||| ||||||||| |  |||||||||||||||||    
T  36197 aagattcataatttatatcattagtaaactatgtaatt 36234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 10602 - 10657
Alignment:
Q  37 ggaggtttacataccttctaattttttgggatttcaaatctcctttatattgtctt 92  Q
    ||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||    
T  10602 ggaggtttacaaaccttctaatttttggggatttcaaatctcttttatattgtctt 10657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 55 - 247
Target Start/End: Complemental strand, 43058778 - 43058586
Alignment:
Q  55 taattttttgggatttcaaatctcctttatattgtctttgtcaattgaaaattccttcaattaacagttgtattaaacaaaaaagattcgtaatttatac 154  Q
    |||| ||||||| ||||||||||||||||||||||||| ||||  |||||||||||  ||||||||||||||||| | |||||||||| ||||||||||     
T  43058778 taatgttttggggtttcaaatctcctttatattgtctt-gtcatctgaaaattcctcaaattaacagttgtattataaaaaaaagatttgtaatttatag 43058680  T
Q  155 cggtagtaaactatgtaattca-nnnnnnnaaagtacccgagctttttagtcaaatttttaatgacccatccaaactactttttctagctccgc 247  Q
      |||||||||||||||||| |        |||||||| |||||||||||||||| |||||||| |||| |||  ||  ||||||| |||||||    
T  43058679 aagtagtaaactatgtaatttattttttttaaagtacctgagctttttagtcaaacttttaatggcccacccatgctcttttttctggctccgc 43058586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 37 - 174
Target Start/End: Original strand, 15842218 - 15842356
Alignment:
Q  37 ggaggtttacataccttctaattttttgggatttcaaatctcctttatattgtctttgtcaattgaaaattccttcaattaacagttgtat--taaacaa 134  Q
    ||||||||||  ||||| |||||||||||| |||||||||| |||||||| ||| ||||||| ||||||||||  |||| |||||||||||  |||| ||    
T  15842218 ggaggtttactgaccttgtaattttttggggtttcaaatcttctttatatagtc-ttgtcaactgaaaattccaccaatcaacagttgtattgtaaaaaa 15842316  T
Q  135 aaaagattcgtaatttataccggtagtaaactatgtaatt 174  Q
    || ||||||||||||| |   |||||||||||||||||||    
T  15842317 aatagattcgtaattttttgtggtagtaaactatgtaatt 15842356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 247
Target Start/End: Original strand, 27324936 - 27325048
Alignment:
Q  135 aaaagattcgtaatttataccggtagtaaactatgtaattcannnnnnnaaagtacccgagctttttagtcaaatttttaatgacccatccaaactactt 234  Q
    ||||||||||||||||||| | ||||||||||| |||||| |       || ||||||||| |||||||||||| |||||||| ||||||||||||| ||    
T  27324936 aaaagattcgtaatttatagcagtagtaaactacgtaatttatttttctaatgtacccgagatttttagtcaaacttttaatggcccatccaaactattt 27325035  T
Q  235 tttctagctccgc 247  Q
    || ||| ||||||    
T  27325036 ttcctacctccgc 27325048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 174
Target Start/End: Complemental strand, 12882697 - 12882573
Alignment:
Q  49 accttctaattttttgggatttcaaatctcctttata-ttgtctttgtcaattgaaaattccttcaattaacagttgtattaaacaaaaaagattcgtaa 147  Q
    |||||||||||||||||| |||||||| || |||||| ||||| ||||||| ||||||||||  ||||||| |||||||||| | |||||  |||| |||    
T  12882697 accttctaattttttggggtttcaaatatcttttatatttgtc-ttgtcaactgaaaattcc-ccaattaagagttgtattataaaaaaataattcataa 12882600  T
Q  148 tttataccggtagtaaactatgtaatt 174  Q
    |||||| |  ||||||| | |||||||    
T  12882599 tttatagcattagtaaattgtgtaatt 12882573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 18113804 - 18113887
Alignment:
Q  54 ctaattttttgggatttcaaatctcctttatattgtctttgtcaattgaaaattccttcaattaacagttgtattaaacaaaaaa 138  Q
    ||||||||  ||| ||||||||||| ||||||||||| ||||||| |||||||||  |||||||| | |||||||||| ||||||    
T  18113804 ctaattttggggggtttcaaatctcatttatattgtc-ttgtcaactgaaaattctctcaattaagaattgtattaaaaaaaaaa 18113887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 174
Target Start/End: Complemental strand, 1284 - 1124
Alignment:
Q  14 atgcatatacttgttttggtagcggaggtttacataccttctaattttttgggatttcaaatctcctttatattgtctttgtcaattgaaaattccttca 113  Q
    |||| |||||||| || ||||||||| || | ||||| ||||||||| ||||| |||||||||||||||||| | ||  |||||||||||||||||| ||    
T  1284 atgcttatacttggttgggtagcggatgtctgcatactttctaatttattggggtttcaaatctcctttatactatc-ctgtcaattgaaaattcctcca 1186  T
Q  114 attaacagttgtatta-aacaaaaaagattcgtaatttataccggtagtaaactatgtaatt 174  Q
     |||| ||||||| || || ||||||||||||||||||| |   || |||||||||||||||    
T  1185 cttaagagttgtactataaaaaaaaagattcgtaatttaaagtagttgtaaactatgtaatt 1124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 43465912 - 43466000
Alignment:
Q  40 ggtttacataccttctaattttttgggatttcaaatctcctttatattgtctttgtcaattgaaaattccttcaattaacagttgtatta 129  Q
    ||||||||||||||||| ||||||||| ||||||||||| || |||||||| ||||||| ||||||||||| ||||||| ||||||||||    
T  43465912 ggtttacataccttctatttttttggggtttcaaatctctttgatattgtc-ttgtcaaatgaaaattcctccaattaagagttgtatta 43466000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 25911599 - 25911480
Alignment:
Q  128 taaacaaaaaagattcgtaatttataccggtagtaaactatgtaattcannnnnnnaaagtacccgagctttttagtcaaatttttaatgacccatccaa 227  Q
    |||| ||||||||||||||||||||| | ||||||||||||||||||         | ||||||||||||||||||||||| |||| ||| | |||||||    
T  25911599 taaaaaaaaaagattcgtaatttatagcagtagtaaactatgtaatttttttttttatagtacccgagctttttagtcaaacttttgatggcacatccaa 25911500  T
Q  228 actactttttctagctccgc 247  Q
    || | |||||||||||||||    
T  25911499 acaattttttctagctccgc 25911480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 25807225 - 25807300
Alignment:
Q  14 atgcatatacttgttttggtagcggaggtttacataccttctaattttttgggatttcaaatctcctttatattgt 89  Q
    |||| |||| ||| || ||||||||||||||||||||||| |||||||||||  ||||||||||| |||| |||||    
T  25807225 atgcttatatttggttgggtagcggaggtttacataccttttaattttttggtgtttcaaatctcatttacattgt 25807300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 246
Target Start/End: Complemental strand, 44521252 - 44521025
Alignment:
Q  14 atgcatatacttgttttggtagcggaggtttacataccttctaattttttgggatttcaaatctcctttatattgtctttgtcaattgaaaattccttca 113  Q
    |||| |||| ||| || |||||||||||||||||  | |||||||||| | || |||||||||| || |||||| || ||||||  |||||||||||  |    
T  44521252 atgcctatatttggttgggtagcggaggtttacaggc-ttctaattttgtagggtttcaaatcttctatatattatc-ttgtcagctgaaaattcctcta 44521155  T
Q  114 attaacagttgtattaaacaaaaaagattcgtaatttataccggtagtaaactatgtaattcannnnnnnaaagtacccgagctttttagtcaaattttt 213  Q
    ||||||| ||||||  || |||||| | | |||||||||| | ||  ||| |||||||||| |       || |||| ||| ||||||||||||| ||||    
T  44521154 attaacaattgtat--aataaaaaaaact-gtaatttatagcagtgctaacctatgtaatttattttttaaaggtactcgaactttttagtcaaactttt 44521058  T
Q  214 aatgacccatccaaactactttttctagctccg 246  Q
    |||| | ||| ||||||| ||||||| ||||||    
T  44521057 aatggctcattcaaactattttttctggctccg 44521025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 151
Target Start/End: Original strand, 3650600 - 3650715
Alignment:
Q  33 tagcggaggtttacataccttctaattttttgggatttcaaatctcctttatattgtctttgtcaattgaaaattccttcaattaacagttgtattaaac 132  Q
    ||||||||||||||| |||||||||||| | ||| ||||||| |||| | ||||||  |||||||| | ||||||  | ||||||||| |||||||| |     
T  3650600 tagcggaggtttacaaaccttctaatttctgggggtttcaaacctccctcatattg--tttgtcaactaaaaattgttccaattaacatttgtattata- 3650696  T
Q  133 aaaaaagattcgtaattta 151  Q
    ||||||| ||| |||||||    
T  3650697 aaaaaagtttcataattta 3650715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 174
Target Start/End: Complemental strand, 7441514 - 7441373
Alignment:
Q  33 tagcggaggtttacataccttctaattttttgggatttcaaatctcctttatattgtctttgtcaattgaaaattccttcaattaacagttgtatt---a 129  Q
    |||||||||||| || ||||||| |||||| ||| |||||||||||  ||||||||||  ||| || |||||||||   ||||||| |||||||||   |    
T  7441514 tagcggaggtttccaaaccttctgatttttgggggtttcaaatctc--ttatattgtc-ctgtgaactgaaaattctcccaattaagagttgtattataa 7441418  T
Q  130 aacaaaaaagattcgtaatttataccggtagtaaactatgtaatt 174  Q
    || |||||| | || ||||||||| |  |||||||||||||||||    
T  7441417 aaaaaaaaaaaatcataatttatagcattagtaaactatgtaatt 7441373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 25893112 - 25893071
Alignment:
Q  133 aaaaaagattcgtaatttataccggtagtaaactatgtaatt 174  Q
    ||||||||||||||||||| | | ||||||||||||||||||    
T  25893112 aaaaaagattcgtaatttacagcagtagtaaactatgtaatt 25893071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 25090233 - 25090356
Alignment:
Q  14 atgcatatacttgttttggtagcggaggtttacataccttctaattttttgggatttcaaatctcctttatattgtctttgtcaattgaaaattccttca 113  Q
    |||| |||||||| || ||||| |||||| |||| || ||||||||||||||| |||||||||||||||||||| || ||||||| |||||||| ||  |    
T  25090233 atgcttatacttggttgggtagtggaggtctacagacattctaattttttggggtttcaaatctcctttatattttc-ttgtcaactgaaaatttctcaa 25090331  T
Q  114 attaacagttgtattaaacaaaaaa 138  Q
    ||||| |||||||||| | ||||||    
T  25090332 attaatagttgtattataaaaaaaa 25090356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 138
Target Start/End: Original strand, 4998424 - 4998528
Alignment:
Q  33 tagcggaggtttacataccttctaattttttgggatttcaaatctcctttatattgtctttgtcaattgaaaattccttcaattaacagttgtattaaac 132  Q
    ||||||||||||||  |||||||||||||| ||| ||||||||||  ||||||||||| ||||||| |||||||||   ||||||| |||||||||| |     
T  4998424 tagcggaggtttaccgaccttctaatttttcggggtttcaaatcttttttatattgtc-ttgtcaactgaaaattctcccaattaagagttgtattataa 4998522  T
Q  133 aaaaaa 138  Q
    ||||||    
T  4998523 aaaaaa 4998528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 19706148 - 19706220
Alignment:
Q  19 tatacttgttttggtagcggaggtttacataccttctaattttttgggatttcaaatctcctttatattgtct 91  Q
    |||||||| || | ||| ||||||||||||||||| || ||||||||| ||||||||||| || |||||||||    
T  19706148 tatacttggttggttagtggaggtttacataccttatatttttttggggtttcaaatctctttgatattgtct 19706220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 170
Target Start/End: Original strand, 19706345 - 19706482
Alignment:
Q  33 tagcggaggtttacataccttctaattttttgggatttcaaatctcctttatattgtctttgtcaattgaaaattccttcaattaacagttgtat--taa 130  Q
    ||||| ||||||||||| |||||| ||||||||| ||||||||||| || |||||||| | ||||| ||||||||||  ||| ||| ||||||||  |||    
T  19706345 tagcgaaggtttacatatcttctatttttttggg-tttcaaatctctttgatattgtc-tggtcaaatgaaaattcccccaactaagagttgtattgtaa 19706442  T
Q  131 acaaaaaagattcgtaatttataccggtagtaaactatgt 170  Q
    | |||| | |||| ||||||||| |  || ||||||||||    
T  19706443 aaaaaatatattcataatttatagcattaataaactatgt 19706482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 25090365 - 25090406
Alignment:
Q  133 aaaaaagattcgtaatttataccggtagtaaactatgtaatt 174  Q
    ||||||||||||||||||||||  ||| ||||||||||||||    
T  25090365 aaaaaagattcgtaatttatactagtattaaactatgtaatt 25090406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1390 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold1390
Description:

Target: scaffold1390; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 174
Target Start/End: Original strand, 837 - 983
Alignment:
Q  31 ggtagcggaggtttacataccttctaattttttgggatttcaaatctcctttatattgtctttgtcaattgaaaattccttcaattaacagtt----gta 126  Q
    ||||||||| |||||||||| || |||||| ||||| |||||||||||||||||| | ||  |||||||||||||||||| || |||| ||||    |||    
T  837 ggtagcggatgtttacatactttataatttattggggtttcaaatctcctttatactatc-ctgtcaattgaaaattcctccacttaagagttgtacgta 935  T
Q  127 ttaaacaaaaaagattcgtaatttataccggtagtaaactatgtaatt 174  Q
     || | |||||||||| |||||||| | | ||||||||||||||||||    
T  936 ctataaaaaaaagatttgtaatttaaagcagtagtaaactatgtaatt 983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 174
Target Start/End: Original strand, 43226344 - 43226475
Alignment:
Q  39 aggtttacataccttctaattttttgggatttcaaatctcctttatattgtctttgtcaattgaaaattccttcaattaacagttgtattaaacaaaaaa 138  Q
    ||||||||| ||||||| |||||| ||| ||||||||||| |||||||||||  | ||||||||||||| || ||||||| |||||||||  | ||||||    
T  43226344 aggtttacaaaccttctgatttttgggggtttcaaatctcttttatattgtc--tatcaattgaaaatttctccaattaagagttgtatt--ataaaaaa 43226439  T
Q  139 gattcgtaatttataccggtagtaaactatgtaatt 174  Q
     | || ||||||||| |  |||||||||||||||||    
T  43226440 aaatcataatttatagcattagtaaactatgtaatt 43226475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 50376173 - 50376065
Alignment:
Q  18 atatacttgttttggtagcggaggtttacataccttctaattttttgggatttcaaatctcctttatattgtctttgtcaattgaaaattccttcaatta 117  Q
    ||||||||| || | || |||||||||| | |||||||||||| | ||  ||||||| |||| ||||||||  |||||||| ||||||||  | ||||||    
T  50376173 atatacttgattggttaacggaggtttaaagaccttctaatttgtgggagtttcaaacctcccttatattg--tttgtcaactgaaaattgttccaatta 50376076  T
Q  118 acagttgtatt 128  Q
    ||| |||||||    
T  50376075 acatttgtatt 50376065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2061 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold2061
Description:

Target: scaffold2061; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 33 - 174
Target Start/End: Original strand, 332 - 474
Alignment:
Q  33 tagcggaggtttacataccttctaattttttgggatttcaaatctcctttatattgtctttgtcaattgaaaattccttcaattaacagttgtatt---a 129  Q
    ||||||||||||||||| |||||| ||||||||| ||||||||||| || |||||||| | ||||| ||||||||||  ||||||| |||||||||   |    
T  332 tagcggaggtttacatatcttctatttttttggg-tttcaaatctctttgatattgtc-tggtcaaatgaaaattcccccaattaagagttgtattgtaa 429  T
Q  130 aacaaaaaagattcgtaatttataccggtagtaaactatgtaatt 174  Q
    || |||||| |||| |||||||||    || ||||||||||||||    
T  430 aaaaaaaaatattcataatttatagtattaataaactatgtaatt 474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2061; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 150 - 204
Alignment:
Q  37 ggaggtttacataccttctaattttttgggatttcaaatctcctttatattgtct 91  Q
    |||||||||| |||||| || ||||||||| ||||||||||| || |||||||||    
T  150 ggaggtttacgtaccttatatttttttggggtttcaaatctcgttgatattgtct 204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 174
Target Start/End: Complemental strand, 6228820 - 6228687
Alignment:
Q  36 cggaggtttacataccttctaattttttgggatttcaaatctcctttatattgtctttgtcaattgaaaattccttcaattaacagttgtattaaacaaa 135  Q
    |||||||||||  |||||||||||||| ||| ||||||| ||| |||||||| || ||||||| ||||||||||  ||||||| |||||||||| | |||    
T  6228820 cggaggtttaccgaccttctaatttttgggggtttcaaacctcgtttatattatc-ttgtcaactgaaaattcccccaattaagagttgtattataaaaa 6228722  T
Q  136 aaagattcgtaatttataccggtagtaaactatgtaatt 174  Q
    ||    || ||||||||| |  |||||||||||||||||    
T  6228721 aa----tcataatttatagcattagtaaactatgtaatt 6228687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 26682967 - 26682911
Alignment:
Q  33 tagcggaggtttacataccttctaattttttgggatttcaaatctcctttatattgt 89  Q
    ||||||||| |||||||||||||||||| | ||| ||||||| ||||||||||||||    
T  26682967 tagcggaggattacataccttctaatttgtgggggtttcaaacctcctttatattgt 26682911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 124
Target Start/End: Original strand, 33979884 - 33979974
Alignment:
Q  33 tagcggaggtttacataccttctaattttttgggatttcaaatctcctttatattgtctttgtcaattgaaaattccttcaattaacagttg 124  Q
    |||| ||||||||||||||||||| |||||| |||||||||||||  || |||||| | ||||||| ||||||||||  ||||||| |||||    
T  33979884 tagcagaggtttacataccttctattttttttggatttcaaatctttttgatattgac-ttgtcaaatgaaaattcccccaattaaaagttg 33979974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 239
Target Start/End: Original strand, 25270047 - 25270142
Alignment:
Q  144 gtaatttataccggtagtaaactatgtaattcannnnnnnaaagtacccgagctttttagtcaaatttttaatgacccatccaaactactttttct 239  Q
    ||||||||||   |||||||||||||||||| |       ||||||||||| |||||||||||| ||||||||| |||| |||||||| |||||||    
T  25270047 gtaatttatagtagtagtaaactatgtaatttatttttttaaagtacccgacctttttagtcaagtttttaatggcccacccaaactattttttct 25270142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 129
Target Start/End: Complemental strand, 6294030 - 6293942
Alignment:
Q  36 cggaggtttacataccttctaattttttgggatttcaaatctcctttatattgtctttgtcaattgaaaattccttcaattaacagttgtatta 129  Q
    |||||||||||| ||||| |||||||| | | ||||||||||| |||||||||| ||||| |    ||||||||| ||||||| ||||||||||    
T  6294030 cggaggtttacagaccttttaatttttggtggtttcaaatctcttttatattgt-tttgtaa----aaaattcctccaattaagagttgtatta 6293942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 176
Target Start/End: Complemental strand, 33180405 - 33180261
Alignment:
Q  33 tagcggaggtttacataccttcta--attttttgggatttcaaatctcctttatattgtctttgtcaattgaaaattccttcaattaacagttgtattaa 130  Q
    ||||||||||||||| |||||||   |||| | ||| ||| ||| |||||||||||| || | ||||| |||||||||||||||||||  | |||| ||     
T  33180405 tagcggaggtttacaaaccttcttctatttgtgggggttttaaacctcctttatattatcat-gtcaactgaaaattccttcaattaattg-tgtactat 33180308  T
Q  131 acaaaaa-agattcgtaatttataccggtagtaaactatgtaattca 176  Q
    ||||||| || ||| ||||||||| | || ||||| |||||||||||    
T  33180307 acaaaaatagtttcataatttataacagtggtaaaatatgtaattca 33180261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 303590 - 303499
Alignment:
Q  83 atattgtctttgtcaattgaaaattccttcaattaacagttgtattaaac-aaaaaagattcgtaatttataccggtagtaaactatgtaatt 174  Q
    |||||||||| ||||| |||||||||  |||||||||||||||| |  || ||||||||||| |||||||||   || ||||| |||||||||    
T  303590 atattgtctt-gtcaactgaaaattctctcaattaacagttgtactgtacaaaaaaagattcataatttatagtagttgtaaaatatgtaatt 303499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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