View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14478_low_6 (Length: 229)
Name: NF14478_low_6
Description: NF14478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14478_low_6 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 13878842 - 13879052
Alignment:
| Q |
1 |
aaagttatctatctattacctttggtgctaattaaaactttgtatgtcctgtcgccaccatatatttgtttagcatgcacctgaaaattaaaagaacgta |
100 |
Q |
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| T |
13878842 |
aaagttatctatctattacctttggtgctaattaaaactttgtatgtcctgtcgccaccatatattggttta------------------aaagaacgta |
13878923 |
T |
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| Q |
101 |
catggagagaaaaccaattgccacagcagaatatcacttgattttcaatgatcttttctaacagctctaaatttaatgcatcaagcagttatgtgtgtac |
200 |
Q |
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| T |
13878924 |
catggagagaaaaccaattgccacagcagaatatcacttgattttcaatgatcttttctaacagctctaaatttaatgcagcaagcagttatgtgtgtac |
13879023 |
T |
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| Q |
201 |
gcttcaatcaatataacaaaatttgaaag |
229 |
Q |
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| T |
13879024 |
gcttcaatcaatataacaaaatttgaaag |
13879052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 13874737 - 13874799
Alignment:
| Q |
151 |
atcttttctaacagctctaaatttaatgcatcaagcagttatgtgtgtacgcttcaatcaata |
213 |
Q |
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| T |
13874737 |
atcttttctaacagctctaagtataatgcagcaagcaattatgtgtgtacgcttcaatcaata |
13874799 |
T |
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