View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14478_low_7 (Length: 227)
Name: NF14478_low_7
Description: NF14478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14478_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 40165621 - 40165709
Alignment:
| Q |
27 |
gctactggaataaaatggttatctaatgaattaggata-aagtgacgttgagagaacaatgggctgtgggaggacagagttcatacattga |
116 |
Q |
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| T |
40165621 |
gctacttgaataaaatggttatctaatgaattaggatacaagtgacgttgagagaacaatgagc--tgagaggagagagttcatacattga |
40165709 |
T |
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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 106 - 226
Target Start/End: Complemental strand, 38995404 - 38995281
Alignment:
| Q |
106 |
tcatacattgagaaagttgggagaacagtggaatgcaatatgttgaagttaataataagtaaatgcatcaaatttaactataaaataatat---agtata |
202 |
Q |
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| T |
38995404 |
tcatacattgataaagttgggagagcaatgaaatgttatctgttgaaggtaaggataagcaagtgcatcaaatttaagtattaaataatatagtagtatg |
38995305 |
T |
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| Q |
203 |
caaggtatatgtttagaggaagca |
226 |
Q |
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| T |
38995304 |
caaggtatatgtttagaggaagca |
38995281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 45455621 - 45455577
Alignment:
| Q |
20 |
attcattgctactggaataaaatggttatctaatgaattaggata |
64 |
Q |
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| T |
45455621 |
attcattgctactggaataaaatggttatctaatgaattaggata |
45455577 |
T |
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