View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14479_high_1 (Length: 422)
Name: NF14479_high_1
Description: NF14479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14479_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 48769749 - 48769484
Alignment:
| Q |
19 |
agctatgggtatgctagctcgcctggcaagagatcttcaatggaagatttttatgagaccagaattgacggtgtcgatggtgaaatcgttggcctttttg |
118 |
Q |
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| T |
48769749 |
agctatgggtatgctagctcgcctggcaagagatcttcaatggaagatttttatgagaccagaattgacggtgtcgatggtgaaatcgttggcctttttg |
48769650 |
T |
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| Q |
119 |
gagtctttgatggtatagttacatatttctctaannnnnnnctcctggtcgaattttgattggaaagtatgtcgaaaatatttcacaagggaatcatgtc |
218 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48769649 |
gagtctttgatggtatagttacatatttctctaatttttttctcctggtcgaattttgattggaaagtatgtcgaaaatatttcacaagggaatcatgtc |
48769550 |
T |
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| Q |
219 |
atggatattttatcagtattttcgtattaatgtttctttccgaaatttttccatttcttacaatat |
284 |
Q |
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| T |
48769549 |
atggatattttatcagtattttcgtattaatgtttctttccgaaatttttccatttcttacaatat |
48769484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 347 - 416
Target Start/End: Complemental strand, 48769488 - 48769419
Alignment:
| Q |
347 |
aatatatagcctgattttgtatttttgtcttccattttttagtgatgtcctccatattttgttatagtat |
416 |
Q |
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| T |
48769488 |
aatatatagcctgattttgtacttttgtcttccattttttagtgatgtcctccatattttgttatagtat |
48769419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 3409432 - 3409562
Alignment:
| Q |
19 |
agctatgggtatgctagctcgcctggcaagagatcttcaatggaagatttttatgagaccagaattgacggtgtcgatggtgaaatcgttggcctttttg |
118 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | |||| ||| | ||||||||||||| |
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| T |
3409432 |
agctatggatatgctagctcccctggcaagagatcttcaatggaagatttttatgagacaagaattgacggcattaatggcgaagttgttggcctttttg |
3409531 |
T |
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| Q |
119 |
gagtctttgatggtatagttacatatttctc |
149 |
Q |
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|||| |||||||||||| ||||||| ||||| |
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| T |
3409532 |
gagtttttgatggtatatttacataattctc |
3409562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 3437391 - 3437261
Alignment:
| Q |
19 |
agctatgggtatgctagctcgcctggcaagagatcttcaatggaagatttttatgagaccagaattgacggtgtcgatggtgaaatcgttggcctttttg |
118 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | |||| ||| | ||||||||||||| |
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| T |
3437391 |
agctatggatatgctagctcccctggcaagagatcttcaatggaagatttttatgagacaagaattgacggcattaatggcgaagttgttggcctttttg |
3437292 |
T |
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| Q |
119 |
gagtctttgatggtatagttacatatttctc |
149 |
Q |
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|||| |||||||||||| ||||||| ||||| |
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| T |
3437291 |
gagtttttgatggtatatttacataattctc |
3437261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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