View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14479_high_3 (Length: 219)
Name: NF14479_high_3
Description: NF14479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14479_high_3 |
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| [»] scaffold0727 (2 HSPs) |
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Alignment Details
Target: scaffold0727 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0727
Description:
Target: scaffold0727; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 104 - 200
Target Start/End: Original strand, 3700 - 3800
Alignment:
| Q |
104 |
ctccttattgtatggaacgctagatcaaaaataaaaagctattatttctct----tgtgtttattcctccatattctatgaaaggctagataaaaaataa |
199 |
Q |
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| T |
3700 |
ctccttattgtatggaacgctagataaaaaataaaaaactatcatttctcttttgtgtgtttatttctccgtattctatgaaaggctagataaaaaataa |
3799 |
T |
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| Q |
200 |
a |
200 |
Q |
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| T |
3800 |
a |
3800 |
T |
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Target: scaffold0727; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 3630 - 3668
Alignment:
| Q |
52 |
ttattgttgtattatttctgcggctaagtttgtcatcat |
90 |
Q |
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| T |
3630 |
ttattgttgtattatttctgcggctaagtttttcatcat |
3668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 104 - 200
Target Start/End: Original strand, 23551565 - 23551665
Alignment:
| Q |
104 |
ctccttattgtatggaacgctagatcaaaaataaaaagctattatttctct----tgtgtttattcctccatattctatgaaaggctagataaaaaataa |
199 |
Q |
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| T |
23551565 |
ctccttattgtatggaacgctagataaaaaataaaaaactatcatttctcttttgtgtgtttatttctccgtattctatgaaaggctagataaaaaataa |
23551664 |
T |
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| Q |
200 |
a |
200 |
Q |
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| T |
23551665 |
a |
23551665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 23551495 - 23551533
Alignment:
| Q |
52 |
ttattgttgtattatttctgcggctaagtttgtcatcat |
90 |
Q |
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| T |
23551495 |
ttattgttgtattatttctgcggctaagtttttcatcat |
23551533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 10426245 - 10426213
Alignment:
| Q |
22 |
aaatgtgaatgagagtagtagatggatctatta |
54 |
Q |
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| T |
10426245 |
aaatgtgaatgagagtagtagatggatctatta |
10426213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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