View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14480_high_10 (Length: 459)
Name: NF14480_high_10
Description: NF14480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14480_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 450
Target Start/End: Original strand, 9659270 - 9659694
Alignment:
| Q |
17 |
attaccaattgccataagatgaggaatagttaactccttaacaagttgcactccatgattagaattgttgctattctcaacctttttccttctagttaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9659270 |
attaccaattgccataagatgaggaatagttaactccttaacaagttgcactccatgattagaattgttgctattctcaacctttttccttctagttaaa |
9659369 |
T |
|
| Q |
117 |
aacttccatgaacatgatgaaccttgtcctccatagttactaacactaccttcatgtgaaccatcaccaataaaacccatcaaaaatgtccctcnnnnnn |
216 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9659370 |
aacttccatgaacatgatgaaccttgtcctccatggttactaccactaccttcatgtgaaccatcaccaataaaacccatcaaaaatgtccctctttttt |
9659469 |
T |
|
| Q |
217 |
nccttttcttaccgaacaagtaatatatcaaaaatggtttcagacatcaaagtgaagtgaataattatagaaaacaag---aattatagtggagtgtgat |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
9659470 |
tccttttcttaccgaacaagtaatatatcaaaaatggtttcagacatcaaagtgaagtgaataattatagaaaacaagaataatcatagtggagtgtgat |
9659569 |
T |
|
| Q |
314 |
aagggaaataactatatttcattttcaagtttatttattattataatgacatgtgtgactaatttgtggatgtgaaggtttataataaatgaaacaaaga |
413 |
Q |
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| T |
9659570 |
aagggaaataactatatttc------------atttattattataatgacatgtgtgaataatttgtggatgtgaaggtttaaaataaatgaaacagaga |
9659657 |
T |
|
| Q |
414 |
aaatgttgtcccactttttgaatggttctgatgatgt |
450 |
Q |
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| T |
9659658 |
aaatgttgtcccactttttgaatggttctggtgatgt |
9659694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 9642191 - 9642350
Alignment:
| Q |
17 |
attaccaattgccataagatgaggaatagttaactccttaacaagttgcactccatgattagaattgttgctattctcaacctttttccttctagttaaa |
116 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||| |
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| T |
9642191 |
attaccaattgccataagatgaggaatagttaactccttagcaagttgcactccatgatgagaattgctgctattgtcaacctttttccttctagttaaa |
9642290 |
T |
|
| Q |
117 |
aacttccatgaacatgatgaaccttgtcctccatagttactaacactaccttcatgtgaa |
176 |
Q |
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||| ||||||||||||||||||||||||||||||| | |||| ||||||| || |||||| |
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| T |
9642291 |
aacctccatgaacatgatgaaccttgtcctccataatcactaccactaccctcttgtgaa |
9642350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 9634030 - 9634164
Alignment:
| Q |
17 |
attaccaattgccataagatgaggaatagttaactccttaacaagttgcactccatgattagaattgttgctattctcaacctttttccttctagttaaa |
116 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| ||||||| || | || | |||||| ||||||| ||||| |
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| T |
9634030 |
attaccaattgccatgagatgaggaacagttaactccttagcaagttgcactccatg---agaattgctgttgttgttaaccttcttccttc---ttaaa |
9634123 |
T |
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| Q |
117 |
aacttccatgaacatgatgaaccttgtcctccatagttact |
157 |
Q |
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| T |
9634124 |
aaactccatgaacatgatgaaccttgttctccataattact |
9634164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 9619939 - 9619997
Alignment:
| Q |
93 |
tcaacctttttccttctagttaaaaacttccatgaacatgatgaaccttgtcctccata |
151 |
Q |
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||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
9619939 |
tcaacctttttccttcttgttaaaaacctccatgaacatgatgaaccttgtccaccata |
9619997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 9619848 - 9619905
Alignment:
| Q |
17 |
attaccaattgccataagatgaggaatagttaactccttaacaagttgcactccatga |
74 |
Q |
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||||||||||||||| |||| ||||| ||||||||||||| ||||||| ||||||||| |
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| T |
9619848 |
attaccaattgccatgagatcaggaacagttaactccttagcaagttgtactccatga |
9619905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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