View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14480_high_12 (Length: 435)
Name: NF14480_high_12
Description: NF14480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14480_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 7 - 419
Target Start/End: Original strand, 45220798 - 45221208
Alignment:
| Q |
7 |
gtgagaagaaaaagggctatgttaatggagggtatggtacattgatgttgatattctatgttattgcgtacgcacagaattttattttactaataaacaa |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45220798 |
gtgacaagaaaaagggctatgttaatggagggtatggtacattgatgttgatattctatgttattgcgtacgcacagaattttattttactaataaacaa |
45220897 |
T |
|
| Q |
107 |
ctcatttcctcagcaaataaaaaacgtaactctcaactgacaggactttgcagtatgcaagatcgtataatgcggagaagtatggtgtctgaggtttgaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| || |
|
|
| T |
45220898 |
ctcatttcctcagcaaataaaaaacgtaactc--aactgacaggactttgcagtatgcaagatcgtataatgtggagaagtatggtgtctaaggtttcaa |
45220995 |
T |
|
| Q |
207 |
ctccggtcctgtataaattatgcaatatcgctaccaactgaatattatatgtagatcgtgtttaaacatcagattcctcgtttatttttcatctagagct |
306 |
Q |
| |
|
|| ||||| || |||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45220996 |
cttcggtcttgcataaattatgcaatgtcgctaccaactcaatattatatgtaggtcgtgtttaaacatcagattcctcgtttatttttcatctagagct |
45221095 |
T |
|
| Q |
307 |
cttcttccattcatgttgatatagaattttcttcctttaagaaaccgaatttgtctctttgctttgnnnnnnnnatacaaccatttgatttgttgtagaa |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45221096 |
cttcttccattcatgttgatatagaattttcttcctttaagaaaccgaatttgtctctttgctttgttttttttatacaaccatttgatttgttgtagaa |
45221195 |
T |
|
| Q |
407 |
ttgaagaagatta |
419 |
Q |
| |
|
||||||||||||| |
|
|
| T |
45221196 |
ttgaagaagatta |
45221208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 45329206 - 45329150
Alignment:
| Q |
191 |
gtgtctgaggtttgaactccggtcctgtataaattatgcaatatcgctaccaactga |
247 |
Q |
| |
|
||||| |||||| ||| ||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
45329206 |
gtgtcagaggttcgaatcccgatcctgtataaattatgcaatgtccctaccaactga |
45329150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 15856489 - 15856562
Alignment:
| Q |
175 |
aatgcggagaagtatggtgtctgaggtttgaactccggtcc-tgtataaattatgcaatatcgctaccaactga |
247 |
Q |
| |
|
|||| |||||||| |||||| ||||||||||| ||||||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
15856489 |
aatgtggagaagtggggtgtccgaggtttgaaccccggtccctgtataaattatgcaatgtccctaccaactga |
15856562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 2609416 - 2609449
Alignment:
| Q |
214 |
cctgtataaattatgcaatatcgctaccaactga |
247 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
2609416 |
cctgtataaattatgcaatatccctaccaactga |
2609449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 9125749 - 9125677
Alignment:
| Q |
175 |
aatgcggagaagtatggtgtctgaggtttgaactccggtcctgtataaattatgcaatatcgctaccaactga |
247 |
Q |
| |
|
|||| |||||||| |||||| | |||| |||| |||| |||| ||| | ||||||||||||||||||||||| |
|
|
| T |
9125749 |
aatgtggagaagtgaggtgtccggggttcgaaccccggccctgcatataatatgcaatatcgctaccaactga |
9125677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University